plot_pearson_bubbles: Make a bubble plot from the given data

In pacific-hake/hake-assessment: Stock Assessment for Pacific Hake

Make a bubble plot from the given data

Description

Make a bubble plot from the given data

Usage

plot_pearson_bubbles(
  model,
  type = c("fishery", "survey"),
  clines = age_bubble_cohorts,
  tick_prop = 1,
  vjust_x_labels = -1.5,
  remove_yr_labels = NULL,
  x_labs_mod = 5,
  leg_pos = "none",
  alpha = 0.3,
  xlim = c(1975, year(Sys.Date())),
  point_alpha = main_alpha,
  point_fill = main_fill,
  point_color = "black",
  diag_line_color = age_diag_line_color,
  diag_line_width = age_diag_line_width,
  diag_line_type = age_diag_line_type,
  ...
)

Arguments

model	A model, created by create_rds_file()
type	1 = Fishery, any other value = Survey
clines	An optional vector of years to draw cohort lines through
tick_prop	A value that the length of the major tick marks are multiplied by. This proportion must be set by trial and error. Make sure to change vjust_x_labels so the labels are not overlapping the lines or are too far away from the lines
vjust_x_labels	Adjustment to move the x-axis tick labels and label up or down. Negative numbers move down
remove_yr_labels	A vector of years to remove the ,labels for in case they are overlapping
x_labs_mod	How many years between year labels on the x-axis
leg_pos	See the leg_pos parameter of ggplot2::theme()
alpha	See ggplot2::geom_point()
xlim	Limits for the x-axis
...	Additional parameters passed to ggplot2::geom_point(), ggplot2::geom_segment() and ggplot2::theme()

Value

A ggplot2::ggplot() object

pacific-hake/hake-assessment documentation built on Jan. 14, 2025, 9:12 p.m.