plot_selex_uncertainty: Create a plot of time-varying selectivity panels

In pacific-hake/hake-assessment: Stock Assessment for Pacific Hake

Create a plot of time-varying selectivity panels

Description

Create a plot of time-varying selectivity panels

Usage

plot_selex_uncertainty(
  model,
  yr_lim = c(1990, last_data_yr),
  ages = 1:8,
  n_col = 1,
  rev = FALSE,
  point_size = 1,
  point_fatten = 2,
  border_width = 2,
  border_color = "black",
  border_linetype = "solid",
  show_panel_borders = FALSE,
  label_loc = c(1, 0.75),
  label_font_size = 4,
  pad_top = TRUE,
  pad_bottom = TRUE
)

Arguments

model	A model list, as created by create_rds_file()
yr_lim	A vector of two values representing the minimum and maximum years to plot panels for
ages	A vector of ages to include
n_col	The number of columns to hold panels
rev	Logical. If TRUE, reverse the order of the years
point_size	The point size
point_fatten	The fatness of the point. Needed when using ggplot2::geom_errorbar()
border_width	Thickness of the border line. If NULL no border will be shown
border_color	Color of the column borders
border_linetype	Line type of the column borders
show_panel_borders	Logical. If TRUE, show borders around the panels
label_loc	A vector of two (x, y) describing the label location inside the panels
label_font_size	The labels font size
pad_top	Add blank cells across the top as "padding"
pad_bottom	Add blank cells across the bottom as "padding"

Details

The panels show the medians and the credible interval as calculated in load_extra_mcmc().

Value

A ggplot2::ggplot() object

pacific-hake/hake-assessment documentation built on Jan. 14, 2025, 9:12 p.m.