plot_survey_biomass: Create a plot of survey biomass as points with error bars
In pacific-hake/hake-assessment: Stock Assessment for Pacific Hake

plot_survey_biomass

R Documentation

Create a plot of survey biomass as points with error bars

Description

Create a plot of survey biomass as points with error bars

Usage

plot_survey_biomass(
  model,
  index = c("age1", "age2"),
  x_lim = c(survey_start_yr, survey_end_yr),
  y_lim = c(0, 3),
  x_labs_mod = 5,
  alpha = 0.3,
  tick_prop = 1,
  vjust_x_labels = -1.5,
  remove_yr_labels = NULL,
  point_size = ts_single_model_pointsize,
  point_color = ts_single_model_pointcolor,
  point_shape = ts_single_model_pointshape,
  point_stroke = ts_single_model_pointstroke,
  line_width = ts_single_model_linewidth,
  line_color = ts_single_model_linecolor,
  line_type = ts_single_model_linetype,
  ...
)

Arguments

`model`	A model, created by `create_rds_file()`
`index`	The index type to plot
`y_lim`	A vector of two for the minimum and maximum values for the y-axis on the plot
`x_labs_mod`	How many years between year labels on the x-axis
`alpha`	The transparency for the error bars (non-squid). Transparency for the squid error bars are 1
`tick_prop`	A value that the length of the major tick marks are multiplied by. This proportion must be set by trial and error. Make sure to change `vjust_x_labels` so the labels are not overlapping the lines or are too far away from the lines
`vjust_x_labels`	Adjustment to move the x-axis tick labels and label up or down. Negative numbers move down
`remove_yr_labels`	A vector of years to remove the ,labels for in case they are overlapping
`point_size`	The size of the points (See `ggplot2::geom_point()` for more details)
`point_color`	The R color for the points (See `ggplot2::geom_point()` for more details)
`point_shape`	The R shape number for the points (See `ggplot2::geom_point()` for more details)
`point_stroke`	The stroke value for the points (See `ggplot2::geom_point()` for more details)
`line_width`	Width of the error bar lines
`line_color`	R color for the error bar lines
`line_type`	Line type for the error bar lines