table_param_est_last_year_hardcoded: Returns a 'kableExtra::kbl()' containing a comparison of...

In pacific-hake/hake-assessment: Stock Assessment for Pacific Hake

Returns a kableExtra::kbl() containing a comparison of parameter estimates for 1 model compared to hard coded values for the base model in 2023. This function is meant to be destroyed after the 2024 assessment season. It is used for table 26 only because we could not locate the output files to reproduce the table.

Description

Returns a kableExtra::kbl() containing a comparison of parameter estimates for 1 model compared to hard coded values for the base model in 2023. This function is meant to be destroyed after the 2024 assessment season. It is used for table 26 only because we could not locate the output files to reproduce the table.

Usage

table_param_est_last_year_hardcoded(
  d = NULL,
  model = NULL,
  model_nms = NULL,
  show_loglike = FALSE,
  section_row_inds = c(1, 11, 20, 21 + length(large_cohorts)),
  section_row_headers = c("Parameters", "Derived Quantities",
    paste0("Reference Points based on ", fspr_40_bold_for_latex_table),
    "Negative log likelihoods"),
  section_italics = TRUE,
  section_bold = TRUE,
  section_underline = TRUE,
  section_line_above = FALSE,
  section_line_below = TRUE,
  digits = 3,
  right_cols_cm = 1.8,
  font_size = 10,
  header_font_size = 10,
  header_vert_spacing = 12,
  header_vert_scale = 1.2,
  longtable = FALSE,
  caption = NULL,
  ...
)

Arguments

model	A list of models which contain the MCMC output
model_nms	A vector of names of the same length as the number of models in the models list
show_loglike	Logical. If TRUE show the negative log likelihood values in the table
section_italics	Logical. If TRUE, make the section header lines italicized
section_bold	Logical. If TRUE, make the section header lines boldface
section_underline	Logical. If TRUE, make the section header lines underlined
section_line_above	Logical. If TRUE, place a horizontal line above section header lines
section_line_below	Logical. If TRUE, place a horizontal line below section header lines
digits	Number of decimal points for the estimates
right_cols_cm	The number of centimeters wide to make all of the rightmost columns (all the value columns)
font_size	The table data and header font size in points
header_font_size	The font size for the headers only. If NULL, the headers will have the same font size as the table cell data
header_vert_scale	Scale factor to create the vertical spacing value. See header_vert_spacing
longtable	Logical. Passed to kableExtra::kbl()
caption	The table caption, or NULL for none. Passed to kableExtra::kbl()
...	Arguments passed to knitr::kable()
vert_spacing	The vertical spacing between newlines for this font. If NULL this will be calculated as header_font_size * header_vert_scale

Value

An knitr::kable() object

pacific-hake/hake-assessment documentation built on Nov. 8, 2024, 1:16 p.m.