|bd_branch_numbers||Give branch numbering for BadiRate|
|bd_collect||Collect results files from BadiRate runs.|
|bd_decode_tree_ids||Decoding branch numbers to species compositions|
|bd_extract_gain||Extract and parse gain/loss information by the selected best...|
|bd_model_select||Model selection from likelihood test and wAIC measurment|
|prepare_badirate||Create BadiRate setup table and corresponding scripts for PBS...|
|qstat||Wrapper to qstat command|
|qsub||Wrapper to qsub command|
|sbatch||Wrapper to sbatch command|
|split_orthogroups||Splitting and filtering orthogroups to individual files|
|squeue||Wrapper to queue command|
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