Man pages for palfalvi/badirater
Helper functions to run and process BadiRate analysis in whole-genome scale

bd_branch_numbersGive branch numbering for BadiRate
bd_collectCollect results files from BadiRate runs.
bd_decode_tree_idsDecoding branch numbers to species compositions
bd_extract_gainExtract and parse gain/loss information by the selected best...
bd_model_selectModel selection from likelihood test and wAIC measurment
prepare_badirateCreate BadiRate setup table and corresponding scripts for PBS...
qstatWrapper to qstat command
qsubWrapper to qsub command
sbatchWrapper to sbatch command
split_orthogroupsSplitting and filtering orthogroups to individual files
squeueWrapper to queue command
palfalvi/badirater documentation built on Aug. 19, 2018, 7:20 p.m.