split_orthogroups: Splitting and filtering orthogroups to individual files
In palfalvi/badirater: Helper functions to run and process BadiRate analysis in whole-genome scale
View source: R/split_orthogroups.R
split_orthogroups R Documentation
Splitting and filtering orthogroups to individual files
Description
Splitting and filtering orthogroups to individual files
Usage
split_orthogroups(og_file, max_count = 40,
og_path = "./badirate_orthogroups")
Arguments
og_file
Output from orthofinder (Orthogroups.GeneCount.csv) or similarly formatted count table.
max_count
Integer. Maximum number of genes per family/orthogroup per species.
og_path
Path to create the split files into.
Value
Null. Writes files to given path
palfalvi/badirater documentation built on June 26, 2022, 2:11 a.m.
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View source: R/split_orthogroups.R
| split_orthogroups | R Documentation |
Splitting and filtering orthogroups to individual files
Description
Splitting and filtering orthogroups to individual files
Usage
split_orthogroups(og_file, max_count = 40, og_path = "./badirate_orthogroups")
Arguments
og_file |
Output from orthofinder (Orthogroups.GeneCount.csv) or similarly formatted count table. |
max_count |
Integer. Maximum number of genes per family/orthogroup per species. |
og_path |
Path to create the split files into. |
Value
Null. Writes files to given path
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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