bd_branch_numbers: Give branch numbering for BadiRate

In palfalvi/badirater: Helper functions to run and process BadiRate analysis in whole-genome scale

Give branch numbering for BadiRate

Description

Give branch numbering for BadiRate

Usage

bd_branch_numbers(tree, og = "./Orthogroups.GeneCount.csv",
  badirate_path = "", plot = FALSE, tree_file = "./branch_ids.tree")

Arguments

tree	Ultrametric species tree.
og	Orthogroup count file (Orthogroups.GeneCount.csv).
badirate_path	Path to BadiRate.pl executable.
plot	Logical. If TRUE, plots a tree with corresponding branch numbers. If FALSE, gives the tree in text.
tree_file	Where to save the tree, which contains the branch ids.

Value

Either a plot or text of a labeled phylogenetic tree.

palfalvi/badirater documentation built on June 26, 2022, 2:11 a.m.