bd_branch_numbers: Give branch numbering for BadiRate

View source: R/branch_numbers.R

bd_branch_numbersR Documentation

Give branch numbering for BadiRate

Description

Give branch numbering for BadiRate

Usage

bd_branch_numbers(tree, og = "./Orthogroups.GeneCount.csv",
  badirate_path = "", plot = FALSE, tree_file = "./branch_ids.tree")

Arguments

tree

Ultrametric species tree.

og

Orthogroup count file (Orthogroups.GeneCount.csv).

badirate_path

Path to BadiRate.pl executable.

plot

Logical. If TRUE, plots a tree with corresponding branch numbers. If FALSE, gives the tree in text.

tree_file

Where to save the tree, which contains the branch ids.

Value

Either a plot or text of a labeled phylogenetic tree.


palfalvi/badirater documentation built on June 26, 2022, 2:11 a.m.