ASEset-filters: genotype filter methods

In pappewaio/AllelicImbalance: Investigates Allele Specific Expression

Description

useful genotype filters

Usage

hetFilt(x, ...)

## S4 method for signature 'ASEset'
hetFilt(x, source = "genotype", ...)

Arguments

x	ASEset object
...	internal param
source	'genotype' or 'alleleCounts'

Details

hetFilt returns TRUE if the samples is heterozygote, based on stored genotype information present in the phase data.

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples

#load example data
data(ASEset)
a <- ASEset

genotype(a) <- inferGenotypes(a)
hets <- hetFilt(a) 

pappewaio/AllelicImbalance documentation built on April 11, 2020, 2:58 a.m.