inferAltAllele: inferAltAllele

In pappewaio/AllelicImbalance: Investigates Allele Specific Expression

Description

inference of the alternate allele based on count data

Arguments

x	matrix see examples
return.class	class of returned object
allele.source	'arank'
verbose	make function more talkative
...	arguments to forward to internal functions

Details

The inference essentially ranks all alleles and the most expressed allele not declared as reference will be inferred as the alternative allele. At the moment only inference of bi-allelic alternative alleles are available.

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples

#load data
data(ASEset)

alt <- inferAltAllele(ASEset)

pappewaio/AllelicImbalance documentation built on April 11, 2020, 2:58 a.m.