DetectedAI-summary: DetectedAI summary

Description Usage Arguments Details Author(s) Examples

Description

Summary helper functions for the DetectedAI-class

Usage

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
frequency_vs_threshold_variable_summary(x, ...)

## S4 method for signature 'DetectedAI'
frequency_vs_threshold_variable_summary(
  x,
  var = "threshold.count.sample",
  return.class = "matrix",
  ...
)

detectedAI_vs_threshold_variable_summary(x, ...)

## S4 method for signature 'DetectedAI'
detectedAI_vs_threshold_variable_summary(x, var = "threshold.count.sample")

usedSNPs_vs_threshold_variable_summary(x, ...)

## S4 method for signature 'DetectedAI'
usedSNPs_vs_threshold_variable_summary(x, var = "threshold.count.sample")

Arguments

x

detectedAI object

...

pass on variables internally

var

string, see details for available options

return.class

'matrix' or 'array'

Details

Summary helper functions. The documentation will be improved before next release.

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
#some example code here
#generate example
data(ASEset)
a <- ASEset
dai <- detectAI(a, 
			threshold.count.sample=1:50,
			threshold.frequency=seq(0,0.5,by=0.01),
			threshold.delta.frequency=seq(0,0.5,by=0.01),
			threshold.pvalue=rev(seq(0.001,0.05, by=0.005))
)

frequency_vs_threshold_variable_summary(dai)

pappewaio/AllelicImbalance documentation built on April 11, 2020, 2:58 a.m.