DetectedAI-summary: DetectedAI summary

In pappewaio/AllelicImbalance: Investigates Allele Specific Expression

Description

Summary helper functions for the DetectedAI-class

Usage

frequency_vs_threshold_variable_summary(x, ...)

## S4 method for signature 'DetectedAI'
frequency_vs_threshold_variable_summary(
  x,
  var = "threshold.count.sample",
  return.class = "matrix",
  ...
)

detectedAI_vs_threshold_variable_summary(x, ...)

## S4 method for signature 'DetectedAI'
detectedAI_vs_threshold_variable_summary(x, var = "threshold.count.sample")

usedSNPs_vs_threshold_variable_summary(x, ...)

## S4 method for signature 'DetectedAI'
usedSNPs_vs_threshold_variable_summary(x, var = "threshold.count.sample")

Arguments

x	detectedAI object
...	pass on variables internally
var	string, see details for available options
return.class	'matrix' or 'array'

Details

Summary helper functions. The documentation will be improved before next release.

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples

#some example code here
#generate example
data(ASEset)
a <- ASEset
dai <- detectAI(a, 
			threshold.count.sample=1:50,
			threshold.frequency=seq(0,0.5,by=0.01),
			threshold.delta.frequency=seq(0,0.5,by=0.01),
			threshold.pvalue=rev(seq(0.001,0.05, by=0.005))
)

frequency_vs_threshold_variable_summary(dai)

pappewaio/AllelicImbalance documentation built on April 11, 2020, 2:58 a.m.