fitodeMCMC-class: Class "fitodeMCMC". Result of ode fitting based on Markov...

In parksw3/fitode: Tools for Ordinary Differential Equations Model Fitting

Class "fitodeMCMC". Result of ode fitting based on Markov Chain Monte Carlo (MCMC)

Description

Class "fitodeMCMC". Result of ode fitting based on Markov Chain Monte Carlo (MCMC)

Slots

call

(languge) The call to fitodeMCMC

model

odemodel object

data

the time series data

coef

estimated parameters (posterior median)

vcov

estimated variance-covariance matrix

mcmc

mcmc.list object containing posterior samples

lp

mcmc.list object containing log-posterior values of posterior samples

link

list of link functions for model parameters

fixed

list of fixed parameters

prior

list of priors

details

a list containing miscellaneous objects for internal uses

Methods

coef

signature(object = "fitodeMCMC"): Extract median of the posterior.

confint

signature(object = "fitodeMCMC"): Caculate credible intervals from the posterior.

plot

signature(object = "fitodeMCMC"): Plot estimated trajectories and the associated confidence intervals.

predict

signature(object = "fitodeMCMC"): Predict estimated trajectories and the associated confidence intervals from the posterior.

show

signature(object = "fitodeMCMC"): Display object briefly.

stdEr

signature(object = "fitodeMCMC"): Calculate standard errors of the posterior.

summary

signature(object = "fitodeMCMC"): Generate object summary.

vcov

signature(object = "fitodeMCMC"): Extract variance-covariance matrix of the posterior.

parksw3/fitode documentation built on Feb. 16, 2025, 8:48 a.m.