odemodel-class: Class "odemodel" representing ode models
In parksw3/fitode: Tools for Ordinary Differential Equations Model Fitting

odemodel-class

R Documentation

Class "odemodel" representing ode models

Class "odemodel" representing ode models

Create a new odemodel

odemodel(...)

name: name of the model
gfun: gradient function
grad: list of gradients
observation: list of observation models
initial: list of expressions representing the initial values
state: state variables
par: parameters
link: link functions for parameters (log links are used as default)
diffnames: character vector specifying the names of a variable for which the consecutive difference needs to be calculated
call: original function call
jacobian.initial: Jacobian of initial values with respect to its parameters
jacobian.state: Jacobian with respect to its states
jacobian.par: Jacobian with repsect to its parameters
loglik: list of log-likelihood functions
expr: expressions for true trajectories
expr.sensitivity: sensitivity of the expressions with respect to state variables and parameters
keep_sensitivity: (logical) keep sensitivity equations?