Rn.Colony: Run Colony2 through R for parentage on muliple PseudoBabies...

In patbarry6/PseudoBabies: Assess power of genetic markers for parentage through simulation

Description

This function facilitates the analysis of PseudoBabies simulations with the program Colony

Usage

Rn.Colony(
  ColonyDir,
  nSim,
  Miss_data = FALSE,
  MissingVec = c(0, 2.5),
  Geno_Error = FALSE,
  ErrorVals,
  Markerfile,
  ShowProgress = FALSE,
  ...
)

Arguments

ColonyDir	Directory where the Colony program can be called from
Miss_data	Would you like to add missing data to the simulations? Defaults to FALSE
MissingVec	A vector of values for the percent of missing data in the input file. Required if Miss_data=TRUE. Defaults to 0 and 2.5 percent.
Geno_Error	Would you like to add genotyping error to the simualated data? Defaults to FALSE
Markerfile	.csv for marker panels that will be evaluated.
nSims	Number of replicate simulations
ErrorVec	A vector of error values for genotyping error. Required if Geno_Error=TRUE. Defaults to 0 and 2 percent.

Examples

Rn.Colony()

patbarry6/PseudoBabies documentation built on Dec. 22, 2021, 6:41 a.m.