SumFRANzHatch: Summarize the results from FRANz analysis for parentage on...

In patbarry6/PseudoBabies: Assess power of genetic markers for parentage through simulation

Description

This function summarizes the results from multiple runs of Colony2 for parentage inference from PseudoBabies simulations.

Usage

SumFRANzHatch(
  nSim,
  Miss_data = FALSE,
  MissingVec = c(0, 2.5),
  Geno_Error = FALSE,
  ErrorVals,
  Cutoff,
  Markerfile,
  SavePlot = FALSE,
  FacetWrapBy = c("Panel", "Error", "MissDat"),
  ErrorLab,
  LODplots = FALSE
)

Arguments

Miss_data	Would you like to add missing data to the simulations? Defaults to FALSE
MissingVec	A vector of values for the percent of missing data in the input file. Required if Miss_data=TRUE. Defaults to 0 and 2.5 percent.
Geno_Error	Would you like to add genotyping error to the simualated data? Defaults to FALSE
Cutoff	cutoff value for probability value accepting parentage.
Markerfile	.csv for marker panels that will be evaluated.
nSims	Number of replicate simulations
ErrorVec	A vector of error values for genotyping error. Required if Geno_Error=TRUE. Defaults to 0 and 2 percent.

Examples

SumFRANzHatch()

patbarry6/PseudoBabies documentation built on Dec. 22, 2021, 6:41 a.m.