R/doc.R
In patelm9/metaorite: metaorite Package
Defines functions
doc_field_value_annotation
doc_sab_annotation
doc_fields_to_table_map
doc_field_definitions
doc_mrconso_field_definitions
doc_readable_table_names
Documented in
doc_field_definitions
doc_fields_to_table_map
doc_field_value_annotation
doc_mrconso_field_definitions
doc_readable_table_names
doc_sab_annotation
#' @title
#' Metathesaurus Documentation Functions
#'
#' @description
#' Return the information avaible in the UML Web Documentation in dataframe format
#'
#' @name mth_documentation_functions
#' @noRd
NULL
#' @title
#' List the Human Readable Names for the Tables
#' @seealso
#' \code{\link[tibble]{tribble}}
#' @export
#' @importFrom tibble tribble
doc_readable_table_names <-
function() {
tibble::tribble(
~Table,~RRF,
"Files", "MRFILES.RRF",
"Data Elements", "MRCOLS.RRF",
"Documentation for Abbreviated Values", "MRDOC.RRF",
"Concept Names and Sources", "MRCONSO.RRF",
"Simple Concept and Atom Attributes", "MRSAT.RRF",
"Definitions", "MRDEF.RRF",
"Semantic Types", "MRSTY.RRF",
"History", "MRHIST.RRF",
"Related Concepts", "MRREL.RRF",
"Computable Hierarchies", "MRHIER.RRF",
"Contexts", "MRCXT.RRF",
"Mappings", "MRMAP.RRF",
"Simple Mappings", "MRSMAP.RRF",
"Source Information", "MRSAB.RRF",
"Concept Name Ranking", "MRRANK.RRF",
"Ambiguous Term Identifiers", "AMBIGLUI.RRF",
"Ambiguous String Identifiers", "AMBIGSUI.RRF",
"Word Index", "MRXW_BAQ.RRF, MRXW_DAN.RRF, MRXW_DUT.RRF, MRXW_ENG.RRF, MRXW_FIN.RRF, MRXW_FRE.RRF, MRXW_GER.RRF, MRXW_HEB.RRF, MRXW_HUN.RRF, MRXW_ITA.RRF, MRXW_NOR.RRF, MRXW_POR.RRF, MRXW_RUS.RRF, MRXW_SPA.RRF, MRXW_SWE.RRF",
"Normalized Word Index", "MRXNW_ENG.RRF",
"Normalized String Index", "MRXNS_ENG.RRF")
}
#' @title
#' Get Field Definitions for the MRCONSO Table
#' @seealso
#' \code{\link[tibble]{tribble}}
#' @export
#' @importFrom tibble tribble
doc_mrconso_field_definitions <-
function() {
tibble::tribble(~Col,~Description,
"CUI", "Unique identifier for concept",
"LAT", "Language of term",
"TS", "Term status",
"LUI", "Unique identifier for term",
"STT", "String type",
"SUI", "Unique identifier for string",
"ISPREF", "Atom status - preferred (Y) or not (N) for this string within this concept",
"AUI", "Unique identifier for atom - variable length field, 8 or 9 characters",
"SAUI", "Source asserted atom identifier [optional]",
"SCUI", "Source asserted concept identifier [optional]",
"SDUI", "Source asserted descriptor identifier [optional]",
"SAB", "Abbreviated source name (SAB). Maximum field length is 20 alphanumeric characters. Two source abbreviations are assigned:
Root Source Abbreviation (RSAB) — short form, no version information, for example, AI/RHEUM, 1993, has an RSAB of 'AIR' Versioned Source Abbreviation (VSAB) — includes version information, for example, AI/RHEUM, 1993, has an VSAB of 'AIR93' Official source names, RSABs, and VSABs are included on the UMLS Source Vocabulary Documentation page.",
"TTY", "Abbreviation for term type in source vocabulary, for example PN (Metathesaurus Preferred Name) or CD (Clinical Drug). Possible values are listed on the Abbreviations Used in Data Elements page.",
"CODE", "Most useful source asserted identifier (if the source vocabulary has more than one identifier), or a Metathesaurus-generated source entry identifier (if the source vocabulary has none)",
"STR", "String",
"SRL", "Source restriction level",
"SUPPRESS", "Suppressible flag. Values = O, E, Y, or NO: All obsolete content, whether they are obsolesced by the source or by NLM. These will include all atoms having obsolete TTYs, and other atoms becoming obsolete that have not acquired an obsolete TTY (e.g. RxNorm SCDs no longer associated with current drugs, LNC atoms derived from obsolete LNC concepts). E: Non-obsolete content marked suppressible by an editor. These do not have a suppressible SAB/TTY combination.Y: Non-obsolete content deemed suppressible during inversion. These can be determined by a specific SAB/TTY combination explicitly listed in MRRANK.N: None of the aboveDefault suppressibility as determined by NLM (i.e., no changes at the Suppressibility tab in MetamorphoSys) should be used by most users, but may not be suitable in some specialized applications. See the MetamorphoSys Help page for information on how to change the SAB/TTY suppressibility to suit your requirements. NLM strongly recommends that users not alter editor-assigned suppressibility, and MetamorphoSys cannot be used for this purpose.",
"CVF", "Content View Flag. Bit field used to flag rows included in Content View. This field is a varchar field to maximize the number of bits available for use.")
}
#' @title
#' Get All Available Field Definitions
#'
#' @description
#' Sourced from \href{https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/columns_data_elements.html}{https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/columns_data_elements.html}
#'
#' @seealso
#' \code{\link[tibble]{tribble}}
#' @export
#' @importFrom tibble tribble
doc_field_definitions <-
function() {
tibble::tribble(
~Abbreviation,~Description,~Datatype,
"ATN", "Attribute name", "varchar(100)",
"ATNL", "Attribute name list for a source.", "varchar(4000)",
"ATUI", "Unique identifier for attribute.", "varchar(11)",
"ATV", "Attribute value", "varchar(65000)",
"AUI", "Unique identifier for atom", "varchar(9)",
"AUI1", "Unique identifier for first atom", "varchar(9)",
"AUI2", "Unique identifier for second atom", "varchar(9)",
"AV", "Average Length, Characters", "numeric(5,2)",
"BTS", "Size in Bytes", "integer",
"CENC", "Character encoding of a source as specified by IANA", "varchar(20)",
"CFR", "CUI frequency for a source", "integer",
"CHANGEKEY", "CONCEPTSTATUS (if history relates to a SNOMED CT concept) or DESCRIPTIONSTATUS (if history relates to a SNOMED CT atom or description)", "varchar(1000)",
"CHANGETYPE", "Source asserted code for type of change", "varchar(1000)",
"CHANGEVAL", "SNOMED CT CONCEPTSTATUS or DESCRIPTIONSTATUS value after the change took place", "varchar(1000)",
"CLS", "Number of columns", "integer",
"CODE", "Unique Identifier or code for string in source", "varchar(100)",
"COL", "Column or data element name", "varchar(20)",
"CUI", "Unique identifier for concept", "char(8)",
"CUI1", "Unique identifier for first concept", "char(8)",
"CUI2", "Unique identifier for second concept", "char(8)",
"CURVER", "Current Version flag", "char(1)",
"CVF", "Content view flag", "varchar(50)",
"CXN", "The context number if the atom has multiple contexts", "integer",
"CXTY", "Context type for a source", "varchar(50)",
"DEF", "Definition", "varchar(16000)",
"DES", "Descriptive Name", "varchar(200)",
"DIR", "Source asserted directionality flag", "varchar(1)",
"DOCKEY", "Key to be documented", "varchar(50)",
"DTY", "SQL-92 data type for this column", "varchar(20)",
"EXPL", "Detailed explanation", "varchar(1000)",
"FIL", "Physical FILENAME", "varchar(50)",
"FMT", "Comma separated list of COL", "varchar(300)",
"FROMEXPR", "The expression that a mapping is mapped from", "varchar(4000)",
"FROMID", "Metathesaurus identifier for the entity being mapped from", "varchar(50)",
"FROMRES", "Restriction applicable to the entity being mapped from", "varchar(4000)",
"FROMRULE", "Machine processible rule applicable to the entity being mapped from", "varchar(4000)",
"FROMSID", "Source asserted identifier for the entity being mapped from", "varchar(50)",
"FROMTYPE", "The type of expression that a mapping is mapped from", "varchar(50)",
"HCD", "Source asserted hierarchical number or code of context member (if it exists)", "varchar(100)",
"IMETA", "Version of the Metathesaurus that a source was added", "varchar(10)",
"ISPREF", "Indicates whether AUI is preferred", "char(1)",
"LAT", "Language of Term(s)", "char(3)",
"LUI", "Unique identifier for term", "varchar(10)",
"MAPATN", "Mapping attribute name (for future use)", "varchar(20)",
"MAPATV", "Mapping attribute value (for future use)", "varchar(4000)",
"MAPID", "Metathesaurus asserted identifier for mapping", "varchar(50)",
"MAPIN", "Mapping in current subset", "char(1)",
"MAPRANK", "Order in which mappings in a subset should be applied", "integer",
"MAPREASON", "Reason for mapping", "varchar(4000)",
"MAPRES", "Restriction applicable to this mapping", "varchar(4000)",
"MAPRULE", "Machine processible rule applicable to this mapping", "varchar(4000)",
"MAPSETCUI", "CUI of the map set", "char(8)",
"MAPSETSAB", "SAB of the map set", "varchar(40)",
"MAPSID", "Source asserted identifier for mapping", "varchar(50)",
"MAPSUBSETID", "Map subset identifier used to identify a subset of related mappings within a map set", "varchar(10)",
"MAPTYPE", "Type of mapping", "varchar(50)",
"MAX", "Maximum Length", "integer",
"METAUI", "Metathesaurus asserted unique identifier", "varchar(50)",
"MIN", "Minimum Length", "integer",
"NSTR", "Normalized string", "varchar(3000)",
"NWD", "Normalized word", "varchar(100)",
"PAUI", "Unique identifier for parent atom", "varchar(9)",
"PCUI", "Concept unique identifier in the previous Metathesaurus", "char(8)",
"PLUI", "Lexical unique identifier in the previous Metathesaurus", "varchar(10)",
"PSTR", "Preferred name in the previous Metathesaurus", "varchar(3000)",
"PSUI", "String unique identifier in the previous Metathesaurus", "varchar(10)",
"PTR", "Path to root", "varchar(1000)",
"RANK", "Termgroup ranking", "integer",
"RCUI", "Unique identifier for root SRC concept", "char(8)",
"REASON", "Explanation of change, if present", "varchar(1000)",
"REF", "Documentation Section Number", "varchar(20)",
"REL", "Relationship label", "varchar(4)",
"RELA", "Additional relationship label", "varchar(100)",
"RG", "Relationship group", "varchar(10)",
"RMETA", "Version of the Metathesaurus where a version is removed", "varchar(10)",
"RSAB", "Root source abbreviation", "varchar(40)",
"RUI", "Unique identifier for relationship", "varchar(10)",
"RWS", "Number of rows", "integer",
"SAB", "Source abbreviation", "varchar(40)",
"SABIN", "Source in current subset", "char(1)",
"SATUI", "Source asserted attribute identifier", "varchar(50)",
"SAUI", "Source asserted atom identifier", "varchar(50)",
"SCC", "Content contact info for a source", "varchar(1000)",
"SCIT", "Source citation", "varchar(4000)",
"SCUI", "Source asserted concept identifier", "varchar(50)",
"SDUI", "Source asserted descriptor identifier", "varchar(50)",
"SF", "Source Family", "varchar(40)",
"SL", "Source of relationship labels", "varchar(40)",
"SLC", "License contact info for a source", "varchar(1000)",
"SON", "Source Official Name", "varchar(3000)",
"SOURCEUI", "Source asserted unique identifier", "varchar(50)",
"SRL", "Source Restriction Level", "integerinteger",
"SRUI", "Source attributed relationship identifier", "varchar(50)",
"SSN", "Source short name", "varchar(3000)",
"STN", "Semantic type tree number", "varchar(100)",
"STR", "String", "varchar(3000)",
"STT", "String type", "varchar(3)",
"STY", "Semantic type", "varchar(50)",
"STYPE", "The name of the column in MRCONSO.RRF or MRREL.RRF that contains the identifier to which the attribute is attached", "varchar(50)",
"STYPE1", "The name of the column in MRCONSO.RRF that contains the first identifier to which the relationship is attached", "varchar(50)",
"STYPE2", "The name of the column in MRCONSO.RRF that contains the second identifier to which the relationship is attached", "varchar(50)",
"SUI", "Unique identifier for string", "varchar(10)",
"SUPPRESS", "Suppressible flag", "char(1)",
"SVER", "Release date or version number of a source", "varchar(20)",
"TFR", "Term frequency for a source", "integer",
"TOEXPR", "The expression that a mapping is mapped to", "varchar(4000)",
"TOID", "Metathesaurus identifier for the entity being mapped to", "varchar(50)",
"TORES", "Restriction applicable to the entity being mapped to", "varchar(4000)",
"TORULE", "Machine processible rule applicable to the entity being mapped to", "varchar(4000)",
"TOSID", "Source asserted identifier for the entity being mapped to", "varchar(50)",
"TOTYPE", "The type of expression that a mapping is mapped to", "varchar(50)",
"TS", "Term status", "char(1)",
"TTY", "Term type in source", "varchar(20)",
"TTYL", "Term type list for a source", "varchar(400)",
"TUI", "Unique identifier of Semantic type", "char(4)",
"TYPE", "Type of information", "varchar(50)",
"VALUE", "Value", "varchar(200)",
"VCUI", "Unique identifier for versioned SRC concept", "char(8)",
"VEND", "Valid end date for a source", "char(8)",
"VER", "Last release version in which CUI1 was valid", "varchar(10)",
"VSAB", "Versioned source abbreviation", "varchar(40)",
"VSTART", "Valid start date for a source", "char(8)",
"WD", "Word in lower-case", "varchar(500)"
)
}
#' @title
#' Get a Map From Fields to Tables
#' @export
#' @importFrom tibble tribble
doc_fields_to_table_map <-
function() {
tibble::tribble(
~Abbreviation,~Table,
"ATN", "MRSAT",
"ATNL", "MRSAB",
"ATUI", "MRSTY",
"ATUI", "MRSAT",
"ATUI", "MRDEF",
"ATV", "MRSAT",
"AUI", "MRHIER",
"AUI", "MRDEF",
"AUI", "MRCONSO",
"AUI1", "MRREL",
"AUI1", "MRAUI",
"AUI2", "MRREL",
"AUI2", "MRAUI",
"AV", "MRCOLS",
"BTS", "MRFILES",
"CENC", "MRSAB",
"CFR", "MRSAB",
"CHANGEKEY", "MRHIST",
"CHANGETYPE", "MRHIST",
"CHANGEVAL", "MRHIST",
"CLS", "MRFILES",
"CODE", "MRSAT",
"CODE", "MRCONSO",
"COL", "MRCOLS",
"CUI", "MRHIST",
"CUI", "AMBIGLUI",
"CUI", "AMBIGSUI",
"CUI", "CHANGE/MERGEDCUI",
"CUI", "MRCONSO",
"CUI", "MRDEF",
"CUI", "MRHIER",
"CUI", "MRSAT",
"CUI", "MRSTY",
"CUI", "MRXNS_ENG",
"CUI", "MRXNW_ENG",
"CUI", "MRXW_BAQ",
"CUI", "MRXW_CHI",
"CUI", "MRXW_CZE",
"CUI", "MRXW_DAN",
"CUI", "MRXW_DUT",
"CUI", "MRXW_ENG",
"CUI", "MRXW_EST",
"CUI", "MRXW_FIN",
"CUI", "MRXW_FRE",
"CUI", "MRXW_GER",
"CUI", "MRXW_GRE",
"CUI", "MRXW_HEB",
"CUI", "MRXW_HUN",
"CUI", "MRXW_ITA",
"CUI", "MRXW_JPN",
"CUI", "MRXW_KOR",
"CUI", "MRXW_LAV",
"CUI", "MRXW_NOR",
"CUI", "MRXW_POL",
"CUI", "MRXW_POR",
"CUI", "MRXW_RUS",
"CUI", "MRXW_SCR",
"CUI", "MRXW_SPA",
"CUI", "MRXW_SWE",
"CUI", "MRXW_TUR",
"CUI1", "MRAUI",
"CUI1", "MRCUI",
"CUI1", "MRREL",
"CUI2", "MRCUI",
"CUI2", "MRAUI",
"CUI2", "MRREL",
"CURVER", "MRSAB",
"CVF", "MRHIST",
"CVF", "MRMAP",
"CVF", "MRSMAP",
"CVF", "MRDEF",
"CVF", "MRHIER",
"CVF", "MRSAT",
"CVF", "MRREL",
"CVF", "MRCONSO",
"CVF", "MRSTY",
"CXN", "MRHIER",
"CXTY", "MRSAB",
"DEF", "MRDEF",
"DES", "MRCOLS",
"DES", "MRFILES",
"DIR", "MRREL",
"DOCKEY", "MRDOC",
"DTY", "MRCOLS",
"EXPL", "MRDOC",
"FIL", "MRCOLS",
"FIL", "MRFILES",
"FMT", "MRFILES",
"FROMEXPR", "MRSMAP",
"FROMEXPR", "MRMAP",
"FROMID", "MRMAP",
"FROMRES", "MRMAP",
"FROMRULE", "MRMAP",
"FROMSID", "MRMAP",
"FROMTYPE", "MRSMAP",
"FROMTYPE", "MRMAP",
"HCD", "MRHIER",
"IMETA", "MRSAB",
"ISPREF", "MRCONSO",
"LAT", "MRSAB",
"LAT", "CHANGE/DELETEDSUI",
"LAT", "MRCONSO",
"LAT", "MRXNS_ENG",
"LAT", "MRXNW_ENG",
"LAT", "MRXW_BAQ",
"LAT", "MRXW_CHI",
"LAT", "MRXW_CZE",
"LAT", "MRXW_DAN",
"LAT", "MRXW_DUT",
"LAT", "MRXW_ENG",
"LAT", "MRXW_EST",
"LAT", "MRXW_FIN",
"LAT", "MRXW_FRE",
"LAT", "MRXW_GER",
"LAT", "MRXW_GRE",
"LAT", "MRXW_HEB",
"LAT", "MRXW_HUN",
"LAT", "MRXW_ITA",
"LAT", "MRXW_JPN",
"LAT", "MRXW_KOR",
"LAT", "MRXW_LAV",
"LAT", "MRXW_NOR",
"LAT", "MRXW_POL",
"LAT", "MRXW_POR",
"LAT", "MRXW_RUS",
"LAT", "MRXW_SCR",
"LAT", "MRXW_SPA",
"LAT", "MRXW_SWE",
"LAT", "MRXW_TUR",
"LUI", "MRSAT",
"LUI", "MRXW_BAQ",
"LUI", "MRXW_DAN",
"LUI", "MRXW_FIN",
"LUI", "MRXW_HEB",
"LUI", "MRXW_LAV",
"LUI", "MRXW_JPN",
"LUI", "MRXW_SCR",
"LUI", "AMBIGLUI",
"LUI", "MRXW_POL",
"LUI", "MRXW_SWE",
"LUI", "MRXW_CZE",
"LUI", "MRCONSO",
"LUI", "MRXW_GER",
"LUI", "MRXW_SPA",
"LUI", "MRXW_ENG",
"LUI", "MRXNW_ENG",
"LUI", "MRXNS_ENG",
"LUI", "MRXW_DUT",
"LUI", "MRXW_POR",
"LUI", "MRXW_ITA",
"LUI", "MRXW_FRE",
"LUI", "MRXW_RUS",
"LUI", "CHANGE/MERGEDLUI",
"LUI", "MRXW_KOR",
"LUI", "MRXW_NOR",
"LUI", "MRXW_HUN",
"LUI", "MRXW_CHI",
"LUI", "MRXW_EST",
"LUI", "MRXW_GRE",
"LUI", "MRXW_TUR",
"MAPATN", "MRMAP",
"MAPATV", "MRMAP",
"MAPID", "MRSMAP",
"MAPID", "MRMAP",
"MAPIN", "MRCUI",
"MAPIN", "MRAUI",
"MAPRANK", "MRMAP",
"MAPREASON", "MRCUI",
"MAPREASON", "MRAUI",
"MAPRES", "MRMAP",
"MAPRULE", "MRMAP",
"MAPSETCUI", "MRMAP",
"MAPSETCUI", "MRSMAP",
"MAPSETSAB", "MRSMAP",
"MAPSETSAB", "MRMAP",
"MAPSID", "MRSMAP",
"MAPSID", "MRMAP",
"MAPSUBSETID", "MRMAP",
"MAPTYPE", "MRMAP",
"MAX", "MRCOLS",
"METAUI", "MRSAT",
"MIN", "MRCOLS",
"NSTR", "MRXNS_ENG",
"NWD", "MRXNW_ENG",
"PAUI", "MRHIER",
"PCUI", "CHANGE/DELETEDCUI",
"PCUI", "CHANGE/MERGEDCUI",
"PLUI", "CHANGE/DELETEDLUI",
"PLUI", "CHANGE/MERGEDLUI",
"PSTR", "CHANGE/DELETEDSUI",
"PSTR", "CHANGE/DELETEDLUI",
"PSTR", "CHANGE/DELETEDCUI",
"PSUI", "CHANGE/DELETEDSUI",
"PTR", "MRHIER",
"RANK", "MRRANK",
"RCUI", "MRSAB",
"REASON", "MRHIST",
"REF", "MRCOLS",
"REL", "MRAUI",
"REL", "MRMAP",
"REL", "MRSMAP",
"REL", "MRCUI",
"REL", "MRREL",
"RELA", "MRAUI",
"RELA", "MRCUI",
"RELA", "MRSMAP",
"RELA", "MRHIER",
"RELA", "MRREL",
"RELA", "MRMAP",
"RG", "MRREL",
"RMETA", "MRSAB",
"RSAB", "MRSAB",
"RUI", "MRREL",
"RWS", "MRFILES",
"SAB", "MRHIST",
"SAB", "MRDEF",
"SAB", "MRREL",
"SAB", "MRRANK",
"SAB", "MRCONSO",
"SAB", "MRSAT",
"SAB", "MRHIER",
"SABIN", "MRSAB",
"SATUI", "MRDEF",
"SATUI", "MRSAT",
"SAUI", "MRCONSO",
"SCC", "MRSAB",
"SCIT", "MRSAB",
"SCUI", "MRCONSO",
"SDUI", "MRCONSO",
"SF", "MRSAB",
"SL", "MRREL",
"SLC", "MRSAB",
"SON", "MRSAB",
"SOURCEUI", "MRHIST",
"SRL", "MRCONSO",
"SRL", "MRSAB",
"SRUI", "MRREL",
"SSN", "MRSAB",
"STN", "MRSTY",
"STR", "MRCONSO",
"STT", "MRCONSO",
"STY", "MRSTY",
"STYPE", "MRSAT",
"STYPE1", "MRREL",
"STYPE2", "MRREL",
"SUI", "MRSAT",
"SUI", "MRXW_BAQ",
"SUI", "MRXW_DAN",
"SUI", "MRXW_FIN",
"SUI", "MRXW_HEB",
"SUI", "AMBIGSUI",
"SUI", "MRXW_JPN",
"SUI", "MRXW_SWE",
"SUI", "MRXW_GER",
"SUI", "MRXW_SPA",
"SUI", "MRXW_DUT",
"SUI", "MRCONSO",
"SUI", "MRXNS_ENG",
"SUI", "MRXW_ENG",
"SUI", "MRXNW_ENG",
"SUI", "MRXW_POR",
"SUI", "MRXW_ITA",
"SUI", "MRXW_RUS",
"SUI", "MRXW_FRE",
"SUI", "MRXW_CZE",
"SUI", "MRXW_NOR",
"SUI", "MRXW_HUN",
"SUI", "MRXW_CHI",
"SUI", "MRXW_EST",
"SUI", "MRXW_GRE",
"SUI", "MRXW_KOR",
"SUI", "MRXW_LAV",
"SUI", "MRXW_POL",
"SUI", "MRXW_SCR",
"SUI", "MRXW_TUR",
"SUPPRESS", "MRCONSO",
"SUPPRESS", "MRDEF",
"SUPPRESS", "MRRANK",
"SUPPRESS", "MRREL",
"SUPPRESS", "MRSAT",
"SVER", "MRHIST",
"SVER", "MRSAB",
"TFR", "MRSAB",
"TOEXPR", "MRMAP",
"TOEXPR", "MRSMAP",
"TOID", "MRMAP",
"TORES", "MRMAP",
"TORULE", "MRMAP",
"TOSID", "MRMAP",
"TOTYPE", "MRMAP",
"TOTYPE", "MRSMAP",
"TS", "MRCONSO",
"TTY", "MRCONSO",
"TTY", "MRRANK",
"TTYL", "MRSAB",
"TUI", "MRSTY",
"TYPE", "MRDOC",
"VALUE", "MRDOC",
"VCUI", "MRSAB",
"VEND", "MRSAB",
"VER", "MRAUI",
"VER", "MRCUI",
"VSAB", "MRSAB",
"VSTART", "MRSAB",
"WD", "MRXW_FIN",
"WD", "MRXW_KOR",
"WD", "MRXW_CHI",
"WD", "MRXW_EST",
"WD", "MRXW_TUR",
"WD", "MRXW_POR",
"WD", "MRXW_ITA",
"WD", "MRXW_ENG",
"WD", "MRXW_HEB",
"WD", "MRXW_FRE",
"WD", "MRXW_DAN",
"WD", "MRXW_SPA",
"WD", "MRXW_GRE",
"WD", "MRXW_RUS",
"WD", "MRXW_BAQ",
"WD", "MRXW_LAV",
"WD", "MRXW_CZE",
"WD", "MRXW_HUN",
"WD", "MRXW_DUT",
"WD", "MRXW_GER",
"WD", "MRXW_SCR",
"WD", "MRXW_POL",
"WD", "MRXW_JPN",
"WD", "MRXW_NOR",
"WD", "MRXW_SWE")
}
#' @title
#' Get Vocabulary Details to Annotate SAB Fields
#'
#' @description
#' Get Maps Between the SAB where the Vocabulary is referred to by Abbreviation. Expansion is sourced from \href{https://www.nlm.nih.gov/research/umls/sourcereleasedocs/index.html}{https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/columns_data_elements.html}
#'
#' @seealso
#' \code{\link[tibble]{tribble}}
#' @export
#' @importFrom tibble tribble
doc_sab_annotation <-
function() {
tibble::tribble(
~`Vocabulary`,~`Abbreviation`,~`Last Updated`,~`Language`,~`Restriction Level`,
"AI/RHEUM", "AIR", "1995AA", "ENG", "0",
"Alternative Billing Concepts", "ALT", "2009AA", "ENG", "3",
"Alcohol and Other Drug Thesaurus", "AOD", "2002AC", "ENG", "0",
"Authorized Osteopathic Thesaurus", "AOT", "2006AD", "ENG", "0",
"Anatomical Therapeutic Chemical Classification System", "ATC", "2020AA", "ENG", "0",
"Beth Israel Problem List", "BI", "1999AA", "ENG", "2",
"Clinical Care Classification", "CCC", "2018AA", "ENG", "1",
"Clinical Problem Statements", "CCPSS", "2000AA", "ENG", "3",
"Clinical Classifications Software Refined for ICD-10-CM", "CCSR_10", "2020AA", "ENG", "0",
"Clinical Classifications Software for ICD-10-PCS", "CCS_10", "2020AA", "ENG", "0",
"Clinical Classifications Software", "CCS", "2005AC", "ENG", "0",
"CDT", "CDT", "2019AB", "ENG", "3",
"Consumer Health Vocabulary", "CHV", "2012AA", "ENG", "0",
"COSTAR", "COSTAR", "2002AD", "ENG", "0",
"Medical Entities Dictionary", "CPM", "2003AC", "ENG", "2",
"CPT Spanish", "CPTSP", "2001AC", "SPA", "3",
"CPT - Current Procedural Terminology", "CPT", "2020AA", "ENG", "3",
"CRISP Thesaurus", "CSP", "2006AB", "ENG", "0",
"COSTART", "CST", "1999AA", "ENG", "0",
"Vaccines Administered", "CVX", "2020AA", "ENG", "0",
"Diseases Database", "DDB", "2001AA", "ENG", "3",
"ICD-10 German", "DMDICD10", "1997AA", "GER", "1",
"UMDNS German", "DMDUMD", "1999AA", "GER", "1",
"DrugBank", "DRUGBANK", "2020AA", "ENG", "0",
"Diagnostic and Statistical Manual of Mental Disorders, Fifth Edition", "DSM-5", "2016AB", "ENG", "3",
"DXplain", "DXP", "1995AA", "ENG", "0",
"Foundational Model of Anatomy", "FMA", "2019AB", "ENG", "0",
"Gene Ontology", "GO", "2019AB", "ENG", "0",
"Gold Standard Drug Database", "GS", "2020AA", "ENG", "3",
"CDT in HCPCS", "HCDT", "2020AA", "ENG", "3",
"HCPCS - Healthcare Common Procedure Coding System", "HCPCS", "2020AA", "ENG", "0",
"CPT in HCPCS", "HCPT", "2020AA", "ENG", "3",
"HUGO Gene Nomenclature Committee", "HGNC", "2019AB", "ENG", "0",
"HL7 Version 2.5", "HL7V2.5", "2005AC", "ENG", "0",
"HL7 Version 3.0", "HL7V3.0", "2020AA", "ENG", "0",
"ICPC2E ICD10 Relationships", "HLREL", "2001AA", "", "3",
"Human Phenotype Ontology", "HPO", "2020AA", "ENG", "0",
"ICD-10, American English Equivalents", "ICD10AE", "1998AA", "ENG", "3",
"ICD-10, Australian Modification, Americanized English Equivalents", "ICD10AMAE", "2002AD", "ENG", "3",
"ICD-10, Australian Modification", "ICD10AM", "2000AB", "ENG", "3",
"International Classification of Diseases, Tenth Revision, Clinical Modification", "ICD10CM", "2019AB", "ENG", "4",
"ICD10, Dutch Translation", "ICD10DUT", "2004AB", "DUT", "3",
"ICD-10 Procedure Coding System", "ICD10PCS", "2019AB", "ENG", "0",
"International Classification of Diseases and Related Health Problems, Tenth Revision", "ICD10", "2004AB", "ENG", "3",
"International Classification of Diseases, Ninth Revision, Clinical Modification", "ICD9CM", "2015AA", "ENG", "0",
"International Classification of Functioning, Disability and Health for Children and Youth", "ICF-CY", "2009AA", "ENG", "4",
"International Classification of Functioning, Disability and Health", "ICF", "2009AA", "ENG", "4",
"International Classification for Nursing Practice", "ICNP", "2019AB", "ENG", "3",
"ICPC2E Dutch", "ICPC2EDUT", "2004AB", "DUT", "3",
"International Classification of Primary Care, 2nd Edition, Electronic", "ICPC2EENG", "2004AB", "ENG", "3",
"ICPC2-ICD10 Thesaurus, Dutch Translation", "ICPC2ICD10DUT", "2005AB", "DUT", "3",
"ICPC2-ICD10 Thesaurus", "ICPC2ICD10ENG", "2005AB", "ENG", "3",
"ICPC-2 PLUS", "ICPC2P", "2006AB", "ENG", "3",
"ICPC Basque", "ICPCBAQ", "2000AA", "BAQ", "0",
"ICPC Danish", "ICPCDAN", "1999AA", "DAN", "0",
"ICPC Dutch", "ICPCDUT", "1999AA", "DUT", "0",
"ICPC Finnish", "ICPCFIN", "1999AA", "FIN", "0",
"ICPC French", "ICPCFRE", "2000AA", "FRE", "0",
"ICPC German", "ICPCGER", "2000AA", "GER", "0",
"ICPC Hebrew", "ICPCHEB", "2000AA", "HEB", "0",
"ICPC Hungarian", "ICPCHUN", "1999AA", "HUN", "0",
"ICPC Italian", "ICPCITA", "1999AA", "ITA", "0",
"ICPC Norwegian", "ICPCNOR", "1999AA", "NOR", "0",
"ICPC Portuguese", "ICPCPOR", "1999AA", "POR", "0",
"ICPC Spanish", "ICPCSPA", "2000AA", "SPA", "0",
"ICPC Swedish", "ICPCSWE", "2000AA", "SWE", "0",
"International Classification of Primary Care", "ICPC", "1998AA", "ENG", "0",
"Congenital Mental Retardation Syndromes", "JABL", "2000AA", "ENG", "1",
"Korean Standard Classification of Disease Version 5", "KCD5", "2009AA", "KOR", "3",
"Library of Congress Subject Headings, Northwestern University subset", "LCH_NW", "2014AB", "ENG", "0",
"Library of Congress Subject Headings", "LCH", "1992AA", "ENG", "0",
"LOINC Linguistic Variant - German, Austria", "LNC-DE-AT", "2020AA", "GER", "0",
"LOINC Linguistic Variant - German, Switzerland", "LNC-DE-CH", "2020AA", "GER", "0",
"LOINC Linguistic Variant - German, Germany", "LNC-DE-DE", "2020AA", "GER", "0",
"LOINC Linguistic Variant - Greek, Greece", "LNC-EL-GR", "2020AA", "GRE", "0",
"LOINC Linguistic Variant - Spanish, Argentina", "LNC-ES-AR", "2020AA", "SPA", "0",
"LOINC Linguistic Variant - Spanish, Switzerland", "LNC-ES-CH", "2020AA", "SPA", "0",
"LOINC Linguistic Variant - Spanish, Spain", "LNC-ES-ES", "2020AA", "SPA", "0",
"LOINC Linguistic Variant - Estonian, Estonia", "LNC-ET-EE", "2020AA", "EST", "0",
"LOINC Linguistic Variant - French, Belgium", "LNC-FR-BE", "2020AA", "FRE", "0",
"LOINC Linguistic Variant - French, Canada", "LNC-FR-CA", "2020AA", "FRE", "0",
"LOINC Linguistic Variant - French, Switzerland", "LNC-FR-CH", "2020AA", "FRE", "0",
"LOINC Linguistic Variant - French, France", "LNC-FR-FR", "2020AA", "FRE", "0",
"LOINC Linguistic Variant - Italian, Switzerland", "LNC-IT-CH", "2020AA", "ITA", "0",
"LOINC Linguistic Variant - Italian, Italy", "LNC-IT-IT", "2020AA", "ITA", "0",
"LOINC Linguistic Variant - Korea, Korean", "LNC-KO-KR", "2020AA", "KOR", "0",
"LOINC Linguistic Variant - Dutch, Netherlands", "LNC-NL-NL", "2020AA", "DUT", "0",
"LOINC Linguistic Variant - Portuguese, Brazil", "LNC-PT-BR", "2020AA", "POR", "0",
"LOINC Linguistic Variant - Russian, Russia", "LNC-RU-RU", "2020AA", "RUS", "0",
"LOINC Linguistic Variant - Turkish, Turkey", "LNC-TR-TR", "2020AA", "TUR", "0",
"LOINC Linguistic Variant - Chinese, China", "LNC-ZH-CN", "2020AA", "CHI", "0",
"LOINC Prerelease Terms, Special Use", "LNC_SPECIAL_USE", "2020AA", "ENG", "0",
"LOINC", "LNC", "2020AA", "ENG", "0",
"Glossary of Clinical Epidemiologic Terms", "MCM", "1992AA", "ENG", "0",
"MedDRA Czech", "MDRCZE", "2020AA", "CZE", "3",
"MedDRA Dutch", "MDRDUT", "2020AA", "DUT", "3",
"MedDRA French", "MDRFRE", "2020AA", "FRE", "3",
"MedDRA German", "MDRGER", "2020AA", "GER", "3",
"MedDRA Hungarian", "MDRHUN", "2020AA", "HUN", "3",
"MedDRA Italian", "MDRITA", "2020AA", "ITA", "3",
"MedDRA Japanese", "MDRJPN", "2020AA", "JPN", "3",
"MedDRA Korean", "MDRKOR", "2020AA", "KOR", "3",
"MedDRA Portuguese", "MDRPOR", "2020AA", "POR", "3",
"MedDRA Russian", "MDRRUS", "2020AA", "RUS", "3",
"MedDRA Spanish", "MDRSPA", "2020AA", "SPA", "3",
"MedDRA", "MDR", "2020AA", "ENG", "3",
"Medication Reference Terminology", "MED-RT", "2020AA", "ENG", "0",
"MEDCIN", "MEDCIN", "2020AA", "ENG", "3",
"MedlinePlus Health Topics", "MEDLINEPLUS", "2020AA", "ENG", "0",
"Multum", "MMSL", "2020AA", "ENG", "1",
"Micromedex", "MMX", "2020AA", "ENG", "3",
"MeSH Czech", "MSHCZE", "2020AA", "CZE", "3",
"MeSH Dutch", "MSHDUT", "2005AB", "DUT", "3",
"MeSH Finnish", "MSHFIN", "2008AA", "FIN", "3",
"MeSH French", "MSHFRE", "2020AA", "FRE", "3",
"MeSH German", "MSHGER", "2019AA", "GER", "3",
"MeSH Italian", "MSHITA", "2019AA", "ITA", "3",
"MeSH Japanese", "MSHJPN", "2015AB", "JPN", "3",
"MeSH Latvian", "MSHLAV", "2012AA", "LAV", "3",
"MeSH Norwegian", "MSHNOR", "2019AA", "NOR", "3",
"MeSH Polish", "MSHPOL", "2020AA", "POL", "3",
"MeSH Portuguese", "MSHPOR", "2020AA", "POR", "3",
"MeSH Russian", "MSHRUS", "2020AA", "RUS", "3",
"MeSH Croatian", "MSHSCR", "2019AA", "SCR", "3",
"MeSH Spanish", "MSHSPA", "2020AA", "SPA", "3",
"MeSH Swedish", "MSHSWE", "2020AA", "SWE", "3",
"MeSH", "MSH", "2020AA", "ENG", "0",
"Metathesaurus CMS Formulary Reference File", "MTHCMSFRF", "2020AA", "ENG", "0",
"ICD-9-CM Entry Terms", "MTHICD9", "2015AA", "ENG", "0",
"ICPC2E American English Equivalents", "MTHICPC2EAE", "2004AB", "ENG", "3",
"ICPC2E-ICD10 Thesaurus, American English Equivalents", "MTHICPC2ICD10AE", "2005AB", "ENG", "3",
"Minimal Standard Terminology French (UMLS)", "MTHMSTFRE", "2002AA", "FRE", "0",
"Minimal Standard Terminology Italian (UMLS)", "MTHMSTITA", "2002AA", "ITA", "0",
"Minimal Standard Terminology (UMLS)", "MTHMST", "2002AA", "ENG", "0",
"FDA Structured Product Labels", "MTHSPL", "2020AA", "ENG", "0",
"Metathesaurus Names", "MTH", "1990AA", "ENG", "0",
"Manufacturers of Vaccines", "MVX", "2020AA", "ENG", "0",
"NANDA-I Taxonomy", "NANDA-I", "2018AA", "ENG", "3",
"NCBI Taxonomy", "NCBI", "2019AB", "ENG", "0",
"NCI SEER ICD Mappings", "NCISEER", "2002AD", "", "0",
"Biomedical Research Integrated Domain Group Model, 3.0.3", "NCI_BRIDG_3_0_3", "2020AA", "ENG", "0",
"Biomedical Research Integrated Domain Group Model Subset", "NCI_BRIDG", "2020AA", "ENG", "0",
"BioCarta online maps of molecular pathways, adapted for NCI use", "NCI_BioC", "2020AA", "ENG", "0",
"Chemical Biology and Drug Development Vocabulary", "NCI_CBDD", "2020AA", "ENG", "0",
"U.S. Centers for Disease Control and Prevention Terms", "NCI_CDC", "2020AA", "ENG", "0",
"CDISC Glossary Terminology", "NCI_CDISC-GLOSS", "2020AA", "ENG", "0",
"CDISC Terminology", "NCI_CDISC", "2020AA", "ENG", "0",
"Clinical Proteomic Tumor Analysis Consortium", "NCI_CPTAC", "2019AB", "ENG", "0",
"Cancer Research Center of Hawaii Nutrition Terminology", "NCI_CRCH", "2020AA", "ENG", "0",
"Common Terminology Criteria for Adverse Events 3.0", "NCI_CTCAE_3", "2020AA", "ENG", "0",
"Common Terminology Criteria for Adverse Events 5.0", "NCI_CTCAE_5", "2020AA", "ENG", "0",
"Common Terminology Criteria for Adverse Events 4.3 Subset", "NCI_CTCAE", "2020AA", "ENG", "0",
"Cancer Therapy Evaluation Program - Simple Disease Classification", "NCI_CTEP-SDC", "2020AA", "ENG", "0",
"Clinical Trials Reporting Program Terms", "NCI_CTRP", "2020AA", "ENG", "0",
"Content Archive Resource Exchange Lexicon", "NCI_CareLex", "2020AA", "ENG", "0",
"NCI Division of Cancer Prevention Program Terms", "NCI_DCP", "2020AA", "ENG", "0",
"Digital Imaging Communications in Medicine Terms", "NCI_DICOM", "2020AA", "ENG", "0",
"NCI Developmental Therapeutics Program", "NCI_DTP", "2020AA", "ENG", "0",
"European Directorate for the Quality of Medicines & Healthcare Terms", "NCI_EDQM-HC", "2020AA", "ENG", "0",
"FDA Terminology", "NCI_FDA", "2020AA", "ENG", "0",
"Global Alignment of Immunization Safety Assessment in Pregnancy Terms", "NCI_GAIA", "2020AA", "ENG", "0",
"Geopolitical Entities, Names, and Codes (GENC) Standard Edition 1", "NCI_GENC", "2020AA", "ENG", "0",
"International Conference on Harmonization Terms", "NCI_ICH", "2020AA", "ENG", "0",
"International Neonatal Consortium", "NCI_INC", "2020AA", "ENG", "0",
"Jackson Laboratories Mouse Terminology, adapted for NCI use", "NCI_JAX", "2020AA", "ENG", "0",
"KEGG Pathway Database Terms", "NCI_KEGG", "2020AA", "ENG", "0",
"NCI Dictionary of Cancer Terms", "NCI_NCI-GLOSS", "2020AA", "ENG", "0",
"NCI HUGO Gene Nomenclature", "NCI_NCI-HGNC", "2020AA", "ENG", "0",
"NCI Health Level 7", "NCI_NCI-HL7", "2020AA", "ENG", "0",
"NCPDP Terminology", "NCI_NCPDP", "2020AA", "ENG", "0",
"NICHD Terminology", "NCI_NICHD", "2020AA", "ENG", "0",
"Prostate Imaging Reporting and Data System Terms", "NCI_PI-RADS", "2020AA", "ENG", "0",
"National Cancer Institute Nature Pathway Interaction Database Terms", "NCI_PID", "2020AA", "ENG", "0",
"Registry Nomenclature Information System", "NCI_RENI", "2020AA", "ENG", "0",
"Unified Code for Units of Measure", "NCI_UCUM", "2020AA", "ENG", "0",
"Zebrafish Model Organism Database Terms", "NCI_ZFin", "2020AA", "ENG", "0",
"NCI Thesaurus", "NCI", "2020AA", "ENG", "0",
"FDB MedKnowledge", "NDDF", "2020AA", "ENG", "3",
"Neuronames Brain Hierarchy", "NEU", "2019AB", "ENG", "3",
"Nursing Interventions Classification", "NIC", "2018AB", "ENG", "3",
"Nursing Outcomes Classification", "NOC", "2018AB", "ENG", "3",
"National Uniform Claim Committee - Health Care Provider Taxonomy", "NUCCPT", "2020AA", "ENG", "3",
"Online Mendelian Inheritance in Man", "OMIM", "2020AA", "ENG", "0",
"Omaha System", "OMS", "2007AC", "ENG", "1",
"Patient Care Data Set", "PCDS", "1999AA", "ENG", "3",
"Physician Data Query", "PDQ", "2019AA", "ENG", "0",
"Perioperative Nursing Data Set", "PNDS", "2018AB", "ENG", "3",
"Pharmacy Practice Activity Classification", "PPAC", "1999AA", "ENG", "3",
"Psychological Index Terms", "PSY", "2005AB", "ENG", "3",
"Quick Medical Reference", "QMR", "1998AA", "ENG", "0",
"Clinical Concepts by R A Miller", "RAM", "2000AA", "ENG", "0",
"Read Codes Am Engl", "RCDAE", "2000AA", "ENG", "3",
"Read Codes Am Synth", "RCDSA", "2000AA", "ENG", "3",
"Read Codes Synth", "RCDSY", "2000AA", "ENG", "3",
"Read Codes", "RCD", "2000AA", "ENG", "3",
"RXNORM", "RXNORM", "2020AA", "ENG", "0",
"SNOMED CT Spanish Edition", "SCTSPA", "2020AA", "SPA", "9",
"SNOMED Intl 1998", "SNMI", "1999AA", "ENG", "9",
"SNOMED 1982", "SNM", "1991AA", "ENG", "9",
"SNOMED CT, US Edition", "SNOMEDCT_US", "2020AA", "ENG", "9",
"SNOMED CT, Veterinary Extension", "SNOMEDCT_VET", "2020AA", "ENG", "9",
"Source of Payment Typology", "SOP", "2020AA", "ENG", "0",
"Standard Product Nomenclature", "SPN", "2004AA", "ENG", "0",
"Source Terminology Names (UMLS)", "SRC", "1995AA", "ENG", "0",
"Traditional Korean Medical Terms", "TKMT", "2011AB", "KOR", "0",
"UltraSTAR", "ULT", "1995AA", "ENG", "3",
"UMDNS", "UMD", "2020AA", "ENG", "1",
"USP Model Guidelines", "USPMG", "2020AA", "ENG", "0",
"USP Compendial Nomenclature", "USP", "2020AA", "ENG", "0",
"Digital Anatomist", "UWDA", "2003AC", "ENG", "0",
"National Drug File", "VANDF", "2020AA", "ENG", "0",
"WHOART French", "WHOFRE", "1999AA", "FRE", "2",
"WHOART German", "WHOGER", "1999AA", "GER", "2",
"WHOART Portuguese", "WHOPOR", "1999AA", "POR", "2",
"WHOART Spanish", "WHOSPA", "1999AA", "SPA", "2",
"WHOART", "WHO", "1999AA", "ENG", "2"
)
}
#' @title
#' Annotate Field Values with Details
#'
#' @description
#' Get Maps Between Field-Value Pairs where the Value is abbreviated as show at \href{https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/abbreviations.html}{https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/columns_data_elements.html}.
#' @seealso
#' \code{\link[tibble]{tribble}}
#' @export
#' @importFrom tibble tribble
doc_field_value_annotation <-
function() {
list(
CXTY = tibble::tribble(
~CXTY,~`CXTY Description`,
"FULL-MULTIPLE", "Full contexts, multiple tree positions",
"FULL-NOSIB-IGNORE-RELA", "Full contexts, no siblings, RELA not used when computing ancestors/descendants",
"FULL-NOSIB-MULTIPLE-IGNORE-RELA", "Full contexts, no siblings, multiple tree positions, RELA not used when computing ancestors/descendants",
"FULL-NOSIB-MULTIPLE", "Full contexts, no siblings, multiple tree positions",
"FULL-NOSIB", "Full contexts, no siblings",
"FULL", "Full contexts"
),
FROMTYPE = tibble::tribble(
~`FROMTYPE
(Type of Expression from Which a
Mapping is Mapped)`,~`FROMTYPE Description`,
"CODE", "Unique Identifier or code for string in source",
"CUI", "Concept unique identifier",
"SCUI", "Source asserted concept unique identifier",
"SDUI", "Source asserted descriptor identifier"
),
LAT = tibble::tribble(
~`LAT (Language of Terms)`,~`LAT Description`,
"BAQ", "Basque",
"CHI", "Chinese",
"CZE", "Czech",
"DAN", "Danish",
"DUT", "Dutch",
"ENG", "English",
"EST", "Estonian",
"FIN", "Finnish",
"FRE", "French",
"GER", "German",
"GRE", "Greek",
"HEB", "Hebrew",
"HUN", "Hungarian",
"ITA", "Italian",
"JPN", "Japanese",
"KOR", "Korean",
"LAV", "Latvian",
"NOR", "Norwegian",
"POL", "Polish",
"POR", "Portuguese",
"RUS", "Russian",
"SCR", "Croatian",
"SPA", "Spanish",
"SWE", "Swedish",
"TUR", "Turkish"
),
MAPATN = tibble::tribble(
~MAPATN,~`MAPATN Description`,
"ACTIVE", "Active",
"", "Empty attribute name"
),
REL = tibble::tribble(
~`REL (Relationship)`,~`REL Description`,
"AQ", "Allowed qualifier",
"CHD", "has child relationship in a Metathesaurus source vocabulary",
"DEL", "Deleted concept",
"PAR", "has parent relationship in a Metathesaurus source vocabulary",
"QB", "can be qualified by.",
"RB", "has a broader relationship",
"RL", "the relationship is similar or alike. the two concepts are similar or alike. In the current edition of the Metathesaurus, most relationships with this attribute are mappings provided by a source, named in SAB and SL; hence concepts linked by this relationship may be synonymous, i.e. self-referential: CUI1 = CUI2. In previous releases, some MeSH Supplementary Concept relationships were represented in this way.",
"RN", "has a narrower relationship",
"RO", "has relationship other than synonymous, narrower, or broader",
"RQ", "related and possibly synonymous.",
"RU", "Related, unspecified",
"SIB", "has sibling relationship in a Metathesaurus source vocabulary.",
"SY", "source asserted synonymy.",
"XR", "Not related, no mapping",
"", "Empty relationship"
),
RELA = tibble::tribble(
~`RELA (Relationship Attribute)`,~`RELA Description`,
"abnormal_cell_affected_by_chemical_or_drug", "abnormal cell affected by chemical or drug",
"abnormality_associated_with_allele", "abnormality associated with allele",
"access_device_used_by", "Access device used by",
"access_instrument_of", "Access instrument of",
"access_of", "Access of",
"active_ingredient_of", "Active ingredient of",
"active_metabolites_of", "Active metabolites of",
"active_moiety_of", "Active Moiety of",
"activity_of_allele", "activity of allele",
"actual_outcome_of", "Actual outcome of",
"add_on_code_for", "Add on code for (Report with)",
"adheres_to", "Adheres to",
"adjacent_to", "Adjacent to",
"adjectival_form_of", "Adjectival form of",
"adjustment_of", "Adjustment of",
"afferent_to", "Afferent to",
"alias_of", "Alias_of",
"allele_absent_from_wild-type_chromosomal_location", "allele absent from wild-type chromosomal location",
"allele_has_abnormality", "allele has abnormality",
"allele_has_activity", "allele has activity",
"allele_in_chromosomal_location", "allele in chromosomal location",
"allele_plays_altered_role_in_process", "allele plays altered role in process",
"allele_plays_role_in_metabolism_of_chemical_or_drug", "allele plays role in metabolism of chemical or drug",
"allelic_variant_of", "Allelic Variant of",
"alternative_of", "Alternative of",
"analyzed_by", "Analyzed by",
"analyzes", "Analyzes",
"anatomic_structure_has_location", "anatomic structure has location",
"anatomic_structure_is_physical_part_of", "anatomic structure is physical part of",
"anatomical_entity_observed_in", "anatomical entity observed in",
"anatomy_originated_from_biological_process", "anatomy originated from biological process",
"answer_to", "answer to",
"anterior_to", "anterior to",
"anteroinferior_to", "anteroinferior to",
"anterolateral_to", "anterolateral to",
"anteromedial_to", "anteromedial to",
"anterosuperior_to", "anterosuperior to",
"approach_of_excluded", "Approach of excluded",
"approach_of_possibly_included", "Approach of possibly included",
"approach_of", "Approach of",
"archetype_of", "Archetype of",
"arterial_supply_of", "Arterial supply of",
"articulates_with", "Articulates with",
"associated_condition_of", "Associated condition of",
"associated_disease", "Associated disease",
"associated_etiologic_finding_of", "Associated etiologic finding of",
"associated_finding_of_excluded", "Associated finding of excluded",
"associated_finding_of_possibly_included", "Associated finding of possibly included",
"associated_finding_of", "Associated finding of",
"associated_function_of", "Associated function of",
"associated_genetic_condition", "Associated genetic condition",
"associated_morphology_of", "Associated morphology of",
"associated_procedure_of_excluded", "Associated procedure of excluded",
"associated_procedure_of_possibly_included", "Associated procedure of possibly included",
"associated_procedure_of", "Associated procedure of",
"associated_with_malfunction_of_gene_product", "associated with malfunction of gene product",
"associated_with", "Associated with",
"attaches_to", "Attaches to",
"basic_dose_form_of", "Basic dose form of",
"basis_of_strength_substance_of", "Basis of strength substance of",
"biological_process_has_associated_location", "biological process has associated location",
"biological_process_has_initiator_chemical_or_drug", "biological process has initiator chemical or drug",
"biological_process_has_initiator_process", "biological process has initiator process",
"biological_process_has_result_anatomy", "biological process has result anatomy",
"biological_process_has_result_biological_process", "biological process has result biological process",
"biological_process_has_result_chemical_or_drug", "biological process has result chemical or drug",
"biological_process_involves_chemical_or_drug", "biological process involves chemical or drug",
"biological_process_involves_gene_product", "biological process involves gene product",
"biological_process_is_part_of_process", "biological process is part of process",
"biological_process_results_from_biological_process", "biological process results from biological process",
"biomarker_type_includes_gene_product", "biomarker type includes gene product",
"biomarker_type_includes_gene", "biomarker type includes gene",
"bounded_by", "Bounded by",
"bounds", "Bounds",
"branch_of", "Branch of",
"british_form_of", "British form of",
"causative_agent_of", "Causative agent of",
"cause_of", "Cause of",
"cdrh_parent_of", "cdrh parent of",
"cell_type_is_associated_with_eo_disease", "cell type is associated with eo disease",
"cell_type_or_tissue_affected_by_chemical_or_drug", "cell type or tissue affected by chemical or drug",
"challenge_of", "Challenge of",
"characterized_by", "Characterized by",
"characterizes", "Characterizes",
"chemical_or_drug_affects_abnormal_cell", "chemical or drug affects abnormal cell",
"chemical_or_drug_affects_cell_type_or_tissue", "chemical or drug affects cell type or tissue",
"chemical_or_drug_affects_gene_product", "chemical or drug affects gene product",
"chemical_or_drug_has_mechanism_of_action", "chemical or drug has mechanism of action",
"chemical_or_drug_has_physiologic_effect", "chemical or drug has physiologic effect",
"chemical_or_drug_initiates_biological_process", "chemical or drug initiates biological process",
"chemical_or_drug_is_metabolized_by_enzyme", "chemical or drug is metabolized by enzyme",
"chemical_or_drug_is_product_of_biological_process", "chemical or drug is product of biological process",
"chemical_or_drug_metabolism_is_associated_with_allele", "chemical or drug metabolism is associated with allele",
"chemical_or_drug_plays_role_in_biological_process", "chemical or drug plays role in biological process",
"chemotherapy_regimen_has_component", "chemotherapy regimen has component",
"chromosomal_location_of_allele", "chromosomal location of allele",
"chromosomal_location_of_wild-type_gene", "chromosomal location of wild-type gene",
"chromosome_involved_in_cytogenetic_abnormality", "chromosome involved in cytogenetic abnormality",
"chromosome_mapped_to_disease", "chromosome mapped to disease",
"class_code_classified_by", "Class code classified by",
"class_of", "Class of",
"classified_as", "Classified as",
"classifies_class_code", "Classifies class code",
"classifies", "Classifies",
"clinical_course_of", "Clinical course of",
"clinically_associated_with", "Clinically associated with",
"clinically_similar", "Clinically similar",
"clinician_form_of", "Clinician form of",
"co-occurs_with", "Co-ocurrs with",
"common_name_of", "common name of",
"completely_excised_anatomy_has_procedure", "completely excised anatomy has procedure",
"completely_excised_anatomy_may_have_procedure", "Completely excised anatomy may have procedure",
"complex_has_physical_part", "complex has physical part",
"component_of_excluded", "Component of excluded",
"component_of_possibly_included", "Component of possibly included",
"component_of", "Component of",
"concentration_strength_denominator_unit_of", "Concentration strength denominator unit of",
"concentration_strength_denominator_value_of", "Concentration strength denominator value of",
"concentration_strength_numerator_unit_of", "Concentration strength numerator unit of",
"concentration_strength_numerator_value_of", "Concentration strength numerator value of",
"concept_in_subset", "concept in subset",
"conceptual_part_of", "Conceptual part of",
"connected_to", "connected to",
"connection_type_of", "connection type of",
"consider_from", "Consider from",
"consider", "Consider",
"consists_of", "Consists of",
"constitutes", "Constitutes",
"constitutional_part_of", "Constitutional part of",
"consumer_friendly_form_of", "Consumer friendly form of",
"contained_in", "Contained in",
"contains", "Contains",
"context_binding_of", "Context binding of",
"continuation_branch_of", "Continuation branch of",
"continuous_distally_with", "continuous distally with",
"continuous_proximally_with", "continuous proximally with",
"continuous_with", "Continuous with",
"contraindicated_class_of", "Contraindicated class of",
"contraindicated_mechanism_of_action_of", "Contraindicated mechanism of action of",
"contraindicated_physiologic_effect_of", "Contraindicated physiologic effect of",
"contraindicated_with_disease", "Contraindicated with disease",
"corresponds_to", "corresponds to",
"count_of_base_of_active_ingredient_of", "Count of base of active ingredient of",
"count_of", "count_of",
"course_of", "Course of",
"ctcae_5_parent_of", "ctcae_5 parent of",
"cytogenetic_abnormality_involves_chromosome", "cytogenetic abnormality involves chromosome",
"data_element_of", "data element of",
"ddx", "dxx",
"default_mapped_from", "Default mapped from",
"default_mapped_to", "Default mapped to",
"defining_characteristic_of", "Defining characteristic of",
"definitional_manifestation_of", "Definitional manifestation of",
"degree_of", "Degree of",
"dependent_of", "Dependent of",
"derives_from", "derives from",
"derives", "derives",
"development_type_of", "development type of",
"developmental_stage_of", "developmental stage of",
"develops_from", "Develops from",
"develops_into", "develops into",
"device_used_by", "Device used by",
"diagnosed_by", "Diagnosed by",
"diagnoses", "Diagnoses",
"diagnostic_criteria_of", "DSM-5 diagnostic criteria for ICD code",
"direct_cell_shape_of", "direct cell shape of",
"direct_device_of", "Direct device of",
"direct_left_of", "direct left of",
"direct_morphology_of", "Direct morphology of",
"direct_procedure_site_of", "Direct procedure site of",
"direct_right_of", "direct right of",
"direct_site_of", "Direct site of",
"direct_substance_of", "Direct substance of",
"disease_excludes_abnormal_cell", "disease excludes abnormal cell",
"disease_excludes_cytogenetic_abnormality", "disease excludes cytogenetic abnormality",
"disease_excludes_finding", "disease excludes finding",
"disease_excludes_metastatic_anatomic_site", "disease excludes metastatic anatomic site",
"disease_excludes_molecular_abnormality", "disease excludes molecular abnormality",
"disease_excludes_normal_cell_origin", "disease excludes normal cell origin",
"disease_excludes_normal_tissue_origin", "disease excludes normal tissue origin",
"disease_excludes_primary_anatomic_site", "disease excludes primary anatomic site",
"disease_has_abnormal_cell", "disease has abnormal cell",
"disease_has_accepted_treatment_with_regimen", "Disease Has Accepted Treatment With Regimen",
"disease_has_associated_anatomic_site", "disease has associated anatomic site",
"disease_has_associated_disease", "disease has associated disease",
"disease_has_associated_gene", "disease has associated gene",
"disease_has_cytogenetic_abnormality", "disease has cytogenetic abnormality",
"disease_has_finding", "disease has finding",
"disease_has_metastatic_anatomic_site", "disease has metastatic anatomic site",
"disease_has_molecular_abnormality", "disease has molecular abnormality",
"disease_has_normal_cell_origin", "disease has normal cell origin",
"disease_has_normal_tissue_origin", "disease has normal tissue origin",
"disease_has_primary_anatomic_site", "disease has primary anatomic site",
"disease_is_grade", "disease is grade",
"disease_is_marked_by_gene", "disease is marked by gene",
"disease_is_stage", "disease is stage",
"disease_mapped_to_chromosome", "disease mapped to chromosome",
"disease_mapped_to_gene", "Disease mapped to gene",
"disease_may_have_abnormal_cell", "disease may have abnormal cell",
"disease_may_have_associated_disease", "disease may have associated disease",
"disease_may_have_cytogenetic_abnormality", "disease may have cytogenetic abnormality",
"disease_may_have_finding", "disease may have finding",
"disease_may_have_molecular_abnormality", "disease may have molecular abnormality",
"disease_may_have_normal_cell_origin", "disease may have normal cell origin",
"disposition_of", "Disposition of",
"distal_to", "distal to",
"divisor_of", "Divisor of",
"do_not_code_with", "Do not code with (excludes)",
"dose_form_administration_method_of", "Dose form administration method of",
"dose_form_intended_site_of", "Dose form intended site of",
"dose_form_of", "Dose form of",
"dose_form_release_characteristic_of", "Dose form release characteristic of",
"dose_form_transformation_of", "Dose form transformation of",
"doseformgroup_of", "Dose form group of",
"drains_into", "drains into",
"due_to", "Due to",
"during_and_or_after", "During AND/OR after",
"during", "During",
"effect_may_be_inhibited_by", "Effect may be inhibited by",
"efferent_to", "Efferent to",
"endogenous_product_related_to", "Endogenous Product Related To",
"ends_during", "Ends during",
"energy_used_by", "Energy used by",
"entire_anatomy_structure_of", "Entire anatomy structure of",
"entry_combination_of", "Entry Combination of",
"entry_version_of", "Entry version of",
"enzyme_metabolizes_chemical_or_drug", "enzyme metabolizes chemical or drug",
"eo_anatomy_is_associated_with_eo_disease", "eo anatomy is associated with eo disease",
"eo_disease_has_associated_cell_type", "eo disease has associated cell type",
"eo_disease_has_associated_eo_anatomy", "eo disease has associated eo anatomy",
"eo_disease_has_property_or_attribute", "eo disease has property or attribute",
"eo_disease_maps_to_human_disease", "eo disease maps to human disease",
"episodicity_of", "Episodicity of",
"evaluation_of", "Evaluation of",
"excised_anatomy_has_procedure", "excised anatomy has procedure",
"excised_anatomy_may_have_procedure", "excised anatomy may have procedure",
"exhibited_by", "Exhibited by",
"exhibits", "Exhibits",
"expanded_form_of", "Expanded form of",
"expected_outcome_of", "Expected outcome of",
"extent_of", "Extent of",
"external_to", "external to",
"finding_context_of", "Finding context of",
"finding_informer_of", "Finding informer of",
"finding_method_of", "Finding method of",
"finding_site_of", "Finding site of",
"focus_of", "Focus of",
"form_of", "Form of",
"formed_by", "formed by",
"forms", "forms",
"fragments_for_synonyms_of", "Fragments for synonyms of",
"full_grown_phenotype_of", "full grown phenotype of",
"fuses_with", "fuses with",
"fusion_of", "fusion of",
"gene_associated_with_disease", "gene associated with disease",
"gene_encodes_gene_product", "gene encodes gene product",
"gene_found_in_organism", "gene found in organism",
"gene_has_abnormality", "gene has abnormality",
"gene_has_physical_location", "gene has physical location",
"gene_in_chromosomal_location", "gene in chromosomal location",
"gene_involved_in_molecular_abnormality", "gene involved in molecular abnormality",
"gene_involved_in_pathogenesis_of_disease", "gene involved in pathogenesis of disease",
"gene_is_biomarker_of", "gene is biomarker of",
"gene_is_biomarker_type", "gene is biomarker type",
"gene_is_element_in_pathway", "gene is element in pathway",
"gene_mapped_to_disease", "gene mapped to disease",
"gene_mutant_encodes_gene_product_sequence_variation", "gene mutant encodes gene product sequence variation",
"gene_plays_role_in_process", "gene plays role in process",
"gene_product_affected_by_chemical_or_drug", "gene product affected by chemical or drug",
"gene_product_encoded_by_gene", "gene product encoded by gene",
"gene_product_expressed_in_tissue", "gene product expressed in tissue",
"gene_product_has_abnormality", "gene product has abnormality",
"gene_product_has_associated_anatomy", "gene product has associated anatomy",
"gene_product_has_biochemical_function", "gene product has biochemical function",
"gene_product_has_chemical_classification", "gene product has chemical classification",
"gene_product_has_gene_product_variant", "gene product has gene product variant",
"gene_product_has_organism_source", "gene product has organism source",
"gene_product_has_structural_domain_or_motif", "gene product has structural domain or motif",
"gene_product_is_biomarker_of", "gene product is biomarker of",
"gene_product_is_biomarker_type", "gene product is biomarker type",
"gene_product_is_element_in_pathway", "gene product is element in pathway",
"gene_product_is_physical_part_of", "gene product is physical part of",
"gene_product_malfunction_associated_with_disease", "gene product malfunction associated with disease",
"gene_product_plays_role_in_biological_process", "gene product plays role in biological process",
"gene_product_sequence_variation_encoded_by_gene_mutant", "gene product sequence variation encoded by gene mutant",
"gene_product_variant_of_gene_product", "gene product variant of gene product",
"genetic_biomarker_related_to", "genetic biomarker related to",
"germ_origin_of", "Germ origin of",
"grade_of", "grade of",
"happens_during", "Happens during",
"has_access_instrument", "Has access instrument",
"has_access", "Has access",
"has_action_guidance", "Has action guidance",
"has_active_ingredient", "Has active ingredient",
"has_active_metabolites", "Has active metabolites",
"has_active_moiety", "Has Active Moiety",
"has_actual_outcome", "Has actual outcome",
"has_add_on_code", "Has add on code (Report with)",
"has_adherent", "Has adherent",
"has_adjustment", "Has adjustment",
"has_aggregation_view", "Has aggregation view",
"has_alias", "Has alias",
"has_allelic_variant", "Has allelic variant",
"has_alternative", "Has alternative",
"has_answer", "has answer",
"has_approach_guidance", "Has approach guidance",
"has_approach", "Has approach",
"has_archetype", "Has archetype",
"has_arterial_supply", "Has arterial supply",
"has_associated_condition", "has_associated_condition",
"has_associated_etiologic_finding", "Has associated etiologic finding",
"has_associated_finding", "Has associated finding",
"has_associated_function", "Has associated function",
"has_associated_morphology", "Has associated morphology",
"has_associated_procedure", "Has associated procedure",
"has_at_risk_population", "Has at risk population",
"has_basic_dose_form", "Has basic dose form",
"has_basis_of_strength_substance", "Has basis of strength substance",
"has_branch", "Has branch",
"has_british_form", "Has British form",
"has_causative_agent", "Has causative agent",
"has_cdrh_parent", "has cdrh parent",
"has_challenge", "Has challenge",
"has_class", "Has class",
"has_clinical_course", "Has clinical course",
"has_clinician_form", "Has clinician form",
"has_common_name", "Has common name",
"has_communication_with_wound", "Has communication with wound",
"has_component", "Has component",
"has_concentration_strength_denominator_unit", "Has concentration strength denominator unit",
"has_concentration_strength_denominator_value", "Has concentration strength denominator value",
"has_concentration_strength_numerator_unit", "Has concentration strength numerator unit",
"has_concentration_strength_numerator_value", "Has concentration strength numerator value",
"has_conceptual_part", "Has conceptual part",
"has_connection_type", "has connection type",
"has_constitutional_part", "Has constitutional part",
"has_consumer_friendly_form", "Has consumer friendly form",
"has_context_binding", "Has context binding",
"has_continuation_branch", "Has continuation branch",
"has_contraindicated_class", "Has contraindicated class",
"has_contraindicated_drug", "Has contraindicated drug",
"has_contraindicated_mechanism_of_action", "Has contraindicated mechanism of action",
"has_contraindicated_physiologic_effect", "Has contraindicated physiologic effect",
"has_count_of_base_of_active_ingredient", "Has count of base of active ingredient",
"has_count", "Has count",
"has_course", "Has course",
"has_ctcae_5_parent", "has ctcae_5 parent",
"has_data_element", "has data element",
"has_defining_characteristic", "Has defining characteristic",
"has_definitional_manifestation", "Has definitional manifestation",
"has_degree", "Has degree",
"has_dependent", "Has dependent",
"has_development_type", "has development type",
"has_developmental_stage", "has developmental stage",
"has_diagnostic_criteria", "ICD has DSM-5 diagnostic criteria",
"has_direct_cell_shape", "has direct cell shape",
"has_direct_device", "Has direct device",
"has_direct_morphology", "Has direct morphology",
"has_direct_procedure_site", "Has direct procedure site",
"has_direct_site", "Has direct site",
"has_direct_substance", "Has direct substance",
"has_disposition", "Has disposition",
"has_divisor", "Has divisor",
"has_dose_form_administration_method", "Has dose form administration method",
"has_dose_form_intended_site", "Has dose form intended site",
"has_dose_form_release_characteristic", "Has dose form release characteristic",
"has_dose_form_transformation", "Has dose form transformation",
"has_dose_form", "Has dose form",
"has_doseformgroup", "Has dose form group",
"has_entire_anatomy_structure", "Has entire anatomy structure",
"has_entry_combination", "Has Entry Combination",
"has_entry_version", "Has entry version",
"has_episodicity", "Has episodicity",
"has_evaluation", "Has evaluation",
"has_exam", "Has exam",
"has_excluded_approach", "Has excluded approach",
"has_excluded_associated_finding", "Has excluded associated finding",
"has_excluded_associated_procedure", "Has excluded associated procedure",
"has_excluded_component", "Has excluded component",
"has_excluded_locale", "Has excluded locale",
"has_excluded_method", "Has excluded method",
"has_excluded_pathology", "Has excluded pathology",
"has_excluded_patient_type", "Has excluded patient type",
"has_excluded_procedure_device", "Has excluded procedure device",
"has_excluded_procedure_site", "Has excluded procedure site",
"has_excluded_route_of_administration", "Has excluded route of administration",
"has_excluded_specimen", "Has excluded specimen",
"has_excluded_surgical_extent", "Has excluded surgical extent",
"has_expanded_form", "Has expanded form",
"has_expected_outcome", "Has expected outcome",
"has_extent", "Has extent",
"has_finding_context", "Has finding context",
"has_finding_informer", "Has finding informer",
"has_finding_method", "Has finding method",
"has_finding_site", "Has finding_site",
"has_focus", "Has focus",
"has_form", "Has form",
"has_fragments_for_synonyms", "Has fragments for synonyms",
"has_free_acid_or_base_form", "has free acid or base form",
"has_full_grown_phenotype", "has full grown phenotype",
"has_fusion", "has fusion",
"has_gene_product_element", "has gene product element",
"has_germ_origin", "Has germ origin",
"has_given_pharmaceutical_substance", "Has given pharmaceutical substance",
"has_grade", "has grade",
"has_imaged_location", "Has imaged location",
"has_imaging_focus", "Has imaging focus",
"has_inactive_ingredient", "Has Inactive Ingredient",
"has_inc_parent", "has inc parent",
"has_indirect_device", "Has indirect device",
"has_indirect_morphology", "Has indirect morphology",
"has_indirect_procedure_site", "Has indirect procedure site",
"has_ingredients", "Has ingredients",
"has_ingredient", "Has ingredient",
"has_inherent_3d_shape", "Has inherent 3-D shape",
"has_inherent_attribute", "Has inherent attribute",
"has_inherent_location", "Has inherent location",
"has_inheritance_type", "Has inheritance type",
"has_insertion", "has insertion",
"has_instrumentation", "Has instrumentation",
"has_intent", "Has intent",
"has_interpretation", "Has interpretation",
"has_lab_number", "Has lab number",
"has_lateral_anatomic_location", "Has lateral anatomic location",
"has_lateral_location_presence", "Has lateral location presence",
"has_laterality", "Has laterality",
"has_life_circumstance", "Has life circumstance",
"has_locale", "Has locale",
"has_location", "Has location",
"has_loinc_number", "Has Loinc number",
"has_lymphatic_drainage", "Has lymphatic drainage",
"has_manifestation", "Has manifestation",
"has_mapping_qualifier", "Has mapping qualifier",
"has_measured_component", "has_measured_component",
"has_measurement_method", "Has measurement method",
"has_mechanism_of_action", "Has mechanism of action",
"has_member", "Has member",
"has_method", "Has method",
"has_modality_subtype", "Has modality subtype",
"has_modality_type", "has modality type",
"has_modification", "Has modification",
"has_multi_level_category", "Has multi-level category",
"has_multipart", "Has multipart",
"has_nerve_supply", "Has nerve supply",
"has_nichd_parent", "has nichd parent",
"has_object_guidance", "Has object guidance",
"has_observed_anatomical_entity", "has observed anatomical entity",
"has_occurrence", "Has occurrence",
"has_onset", "Has onset",
"has_origin", "Has origin",
"has_owning_affiliate", "Has owning affiliate",
"has_owning_section", "Has owning section",
"has_owning_subsection", "Has owning subsection",
"has_panel_element", "CPT laboratory panel code has laboratory panel test member",
"has_parent_group", "Has parent group",
"has_parent", "Has parent",
"has_part_anatomy_structure", "Has part anatomy structure",
"has_part", "Has part",
"has_pathological_process", "Has pathological process",
"has_pathology", "Has pathology",
"has_patient_type", "Has patient type",
"has_permuted_term", "Has permuted term",
"has_pharmaceutical_administration_method", "has pharmaceutical administration method",
"has_pharmaceutical_basic_dose_form", "has pharmaceutical basic dose form",
"has_pharmaceutical_intended_site", "has pharmaceutical intended site",
"has_pharmaceutical_release_characteristics", "has pharmaceutical release characteristics",
"has_pharmaceutical_route", "Has_pharmaceutical_route",
"has_pharmaceutical_state_of_matter", "has pharmaceutical state of matter",
"has_pharmaceutical_transformation", "has pharmaceutical transformation",
"has_pharmacokinetics", "Has pharmacokinetics",
"has_phenotype", "Has phenotype",
"has_physical_part_of_anatomic_structure", "has physical part of anatomic structure",
"has_physiologic_effect", "Has physiologic effect",
"has_physiologic_state", "Has physiologic state",
"has_possibly_included_approach", "Has possibly included approach",
"has_possibly_included_associated_finding", "Has possibly included associated finding",
"has_possibly_included_associated_procedure", "Has possibly included associated procedure",
"has_possibly_included_component", "Has possibly included component",
"has_possibly_included_method", "Has possibly included method",
"has_possibly_included_panel_element", "CPT laboratory panel code has possibly included laboratory panel test member",
"has_possibly_included_pathology", "Has possibly included pathology",
"has_possibly_included_patient_type", "Has possibly included patient type",
"has_possibly_included_procedure_device", "Has possibly included procedure device",
"has_possibly_included_procedure_site", "Has possibly included procedure site",
"has_possibly_included_route_of_administration", "Has possibly included route of administration",
"has_possibly_included_surgical_extent", "Has possibly included surgical extent",
"has_precise_active_ingredient", "Has precise active ingredient",
"has_precise_ingredient", "Has precise ingredient",
"has_precondition", "Has precondition",
"has_presence_guidance", "Has presence guidance",
"has_presentation_strength_denominator_unit", "Has presentation strength denominator unit",
"has_presentation_strength_denominator_value", "Has presentation strength denominator value",
"has_presentation_strength_numerator_unit", "Has presentation strength numerator unit",
"has_presentation_strength_numerator_value", "Has presentation strength numerator value",
"has_primary_segmental_supply", "Has primary segmental supply",
"has_print_name", "Has print name",
"has_priority", "Has priority",
"has_procedure_context", "Has procedure context",
"has_procedure_device", "Has procedure device",
"has_procedure_morphology", "Has procedure morphology",
"has_procedure_site", "Has procedure site",
"has_process_duration", "Has process duration",
"has_process_output", "Has process output",
"has_product_monograph_title", "has product monograph title",
"has_projection", "has projection",
"has_property_type", "Has property type",
"has_property", "Has property",
"has_quantified_form", "Has quantified form",
"has_realization", "Has realization",
"has_recipient_category", "Has recipient category",
"has_regional_part", "Has regional part",
"has_related_developmental_entity", "has related developmental entity",
"has_related_factor", "Has related factor",
"has_result", "Has result",
"has_revision_status", "Has revision status",
"has_risk_factor", "Has risk factor",
"has_route_of_administration", "Has route of administration",
"has_salt_form", "has salt form",
"has_scale_type", "Has scale type",
"has_scale", "Has scale",
"has_secondary_segmental_supply", "Has secondary segmental supply",
"has_segmental_composition", "Has segmental composition",
"has_segmental_supply", "Has segmental supply",
"has_severity", "Has severity",
"has_sign_or_symptom", "Has sign or symptom",
"has_single_level_category", "Has single level category",
"has_sort_version", "Has sort version",
"has_specialty", "Has specialty",
"has_specimen_procedure", "Has specimen procedure",
"has_specimen_source_identity", "Has specimen source identity",
"has_specimen_source_morphology", "Has specimen source morphology",
"has_specimen_source_topography", "Has specimen source topography",
"has_specimen_substance", "Has specimen substance",
"has_specimen", "Has specimen",
"has_stage", "Has stage",
"has_state_of_matter", "Has state of matter",
"has_structural_class", "Has structural class",
"has_subject_of_information", "Has subject of information",
"has_subject_relationship_context", "Has subject relationship context",
"has_subject", "Has subject",
"has_suffix", "Has suffix",
"has_supersystem", "Has supersystem",
"has_supported_concept_property", "Has supported concept property",
"has_supported_concept_relationship", "Has supported concept relationship",
"has_surgical_approach", "has surgical approach",
"has_surgical_extent", "Has surgical extent",
"has_system", "Has system",
"has_target", "has target",
"has_technique", "Has technique",
"has_temporal_context", "Has temporal context",
"has_therapeutic_class", "Has therapeutic class",
"has_time_aspect", "Has time aspect",
"has_time_modifier", "Has time modifier",
"has_timing_of", "Has timing of",
"has_tradename", "Has tradename",
"has_translation", "Has translation",
"has_transliterated_form", "Has transliterated form",
"has_tributary", "Has tributary",
"has_unit_of_presentation", "Has unit of presentation",
"has_units", "Has units",
"has_venous_drainage", "Has venous drainage",
"has_version", "Has version",
"has_view_type", "Has view type",
"homonym_for", "Homonym for",
"homonym_of", "Homonym of",
"human_disease_maps_to_eo_disease", "human disease maps to eo disease",
"icd_asterisk", "ICD asterisk",
"icd_dagger", "ICD dagger",
"imaged_anatomy_has_procedure", "imaged anatomy has procedure",
"inactive_ingredient_of", "Inactive Ingredient Of",
"inc_parent_of", "inc parent of",
"included_in", "included_in",
"includes_sub_specimen", "Includes sub specimen",
"includes", "includes",
"indirect_device_of", "Indirect device of",
"indirect_morphology_of", "Indirect morphology of",
"indirect_procedure_site_of", "Indirect procedure site of",
"induced_by", "Induced by",
"induces", "Induces",
"inferior_to", "inferior to",
"inferolateral_to", "inferolateral to",
"inferomedial_to", "inferomedial to",
"ingredient_of", "Ingredient of",
"ingredients_of", "Ingredients of",
"inherent_3d_shape_of", "Inherent 3-D shape of",
"inherent_location_of", "Inherent location of",
"inheres_in", "Inheres in",
"inheritance_type_of", "Inheritance type of",
"insertion_of", "insertion of",
"instrumentation_of", "Instrumentation of",
"intent_of", "Intent of",
"internal_to", "internal to",
"interpretation_of", "Interpretation of",
"interprets", "Interprets",
"inverse_during_and_or_after", "inverse During AND/OR after",
"inverse_during", "Inverse during",
"inverse_ends_during", "Inverse ends during",
"inverse_happens_during", "Inverse happens during",
"inverse_isa", "Inverse is a",
"inverse_was_a", "Inverse was a",
"is_abnormal_cell_of_disease", "is abnormal cell of disease",
"is_abnormality_of_gene_product", "is abnormality of gene product",
"is_abnormality_of_gene", "is abnormality of gene",
"is_action_guidance_for", "Is action guidance for",
"is_aggregation_view_of", "Is aggregation view of",
"is_approach_guidance_for", "Is approach guidance for",
"is_associated_anatomic_site_of", "is associated anatomic site of",
"is_associated_anatomy_of_gene_product", "is associated anatomy of gene product",
"is_associated_disease_of", "is associated disease of",
"is_biochemical_function_of_gene_product", "is biochemical function of gene product",
"is_chemical_classification_of_gene_product", "is chemical classification of gene product",
"is_chromosomal_location_of_gene", "is chromosomal location of gene",
"is_component_of_chemotherapy_regimen", "is component of chemotherapy regimen",
"is_cytogenetic_abnormality_of_disease", "is cytogenetic abnormality of disease",
"is_exam_for", "Is exam for",
"is_finding_of_disease", "is finding of disease",
"is_given_pharmaceutical_substance_for", "Is given pharmaceutical substance for",
"is_grade_of_disease", "is grade of disease",
"is_imaged_location_for", "Is imaged location for",
"is_imaging_focus_of", "Is imaging focus of",
"is_interpreted_by", "Is interpreted by",
"is_lateral_anatomic_location_of", "Is lateral anatomic location of",
"is_location_of_anatomic_structure", "is location of anatomic structure",
"is_location_of_biological_process", "is location of biological process",
"is_marked_by_gene_product", "is marked by gene product",
"is_mechanism_of_action_of_chemical_or_drug", "is mechanism of action of chemical or drug",
"is_metastatic_anatomic_site_of_disease", "is metastatic anatomic site of disease",
"is_modality_subtype_for", "Is modality subtype for",
"is_modality_type_for", "Is modality type for",
"is_modification_of", "Is modification of",
"is_molecular_abnormality_of_disease", "is molecular abnormality of disease",
"is_normal_cell_origin_of_disease", "is normal cell origin of disease",
"is_normal_tissue_origin_of_disease", "is normal tissue origin of disease",
"is_not_abnormal_cell_of_disease", "is not abnormal cell of disease",
"is_not_cytogenetic_abnormality_of_disease", "is not cytogenetic abnormality of disease",
"is_not_finding_of_disease", "is not finding of disease",
"is_not_metastatic_anatomic_site_of_disease", "is not metastatic anatomic site of disease",
"is_not_molecular_abnormality_of_disease", "is not molecular abnormality of disease",
"is_not_normal_cell_origin_of_disease", "is not normal cell origin of disease",
"is_not_normal_tissue_origin_of_disease", "is not normal tissue origin of disease",
"is_not_primary_anatomic_site_of_disease", "is not primary anatomic site of disease",
"is_object_guidance_for", "Is object guidance for",
"is_organism_source_of_gene_product", "is organism source of gene product",
"is_pharmaceutical_route_for", "Is pharmaceutical route for",
"is_physical_location_of_gene", "is physical location of gene",
"is_physiologic_effect_of_chemical_or_drug", "is physiologic effect of chemical or drug",
"is_presence_guidance_for", "Is presence guidance for",
"is_presence_of_lateral_location", "Is presence of lateral location",
"is_primary_anatomic_site_of_disease", "is primary anatomic site of disease",
"is_property_or_attribute_of_eo_disease", "is property or attribute of eo disease",
"is_qualified_by", "is qualified by",
"is_related_to_endogenous_product", "Is Related To Endogenous Product",
"is_stage_of_disease", "is stage of disease",
"is_structural_domain_or_motif_of_gene_product", "is structural domain or motif of gene product",
"is_subject_of", "Is subject of",
"is_target", "is target",
"is_timing_for", "Is timing for",
"is_view_type_for", "Is view type for",
"isa", "Is a",
"kind_is_domain_of", "kind is domain of",
"kind_is_range_of", "kind is range of",
"lab_number_of", "Lab number",
"larger_than", "Larger Than",
"lateral_to", "lateral to",
"laterality_of", "Laterality of",
"left_lateral_to", "left lateral to",
"left_medial_to", "left medial to",
"life_circumstance_of", "Life circumstance of",
"locale_of_excluded", "Locale of excluded",
"locale_of", "Locale of",
"location_of", "Location of",
"loinc_number_of", "Loinc number of",
"lymphatic_drainage_of", "Lymphatic drainage of",
"manifestation_of", "Manifestation of",
"manufactured_by", "manufactured by",
"manufactures", "manufactures",
"mapped_from", "Mapped from",
"mapped_to", "Mapped to",
"mapping_qualifier_of", "Mapping qualifier of",
"matures_from", "matures from",
"matures_into", "matures into",
"may_be_abnormal_cell_of_disease", "may be abnormal cell of disease",
"may_be_associated_disease_of_disease", "may be associated disease of disease",
"may_be_cytogenetic_abnormality_of_disease", "may be cytogenetic abnormality of disease",
"may_be_diagnosed_by", "May be diagnosed by",
"may_be_finding_of_disease", "may be finding of disease",
"may_be_molecular_abnormality_of_disease", "may be molecular abnormality of disease",
"may_be_normal_cell_origin_of_disease", "may be normal cell origin of disease",
"may_be_prevented_by", "May be prevented by",
"may_be_qualified_by", "May be qualified by",
"may_be_treated_by", "May be treated by",
"may_diagnose", "May diagnose",
"may_inhibit_effect_of", "May inhibit effect of",
"may_prevent", "May prevent",
"may_qualify", "May qualify",
"may_treat", "May treat",
"measured_by", "Measured by",
"measured_component_of", "measured_component_of",
"measurement_method_of", "Measurement method of",
"measures", "Measures",
"mechanism_of_action_of", "Mechanism of action of",
"medial_to", "medial to",
"member_of", "Member of",
"merges_with", "merges with",
"metabolic_site_of", "Metabolic site of",
"method_of_excluded", "Method of excluded",
"method_of_possibly_included", "Method of possibly included",
"method_of", "Method of",
"modified_by", "Modified by",
"modifies", "Modifies",
"molecular_abnormality_involves_gene", "molecular abnormality involves gene",
"moved_from", "Moved from",
"moved_to", "Moved to",
"mth_british_form_of", "MTH British form of",
"mth_expanded_form_of", "MTH expanded form of",
"mth_has_british_form", "MTH has British form",
"mth_has_expanded_form", "MTH has expanded form",
"mth_has_plain_text_form", "Has plain text form, Metathesaurus-asserted",
"mth_has_xml_form", "Has XML form, Metathesaurus-asserted",
"mth_plain_text_form_of", "Plain text form of, Metathesaurus-asserted",
"mth_xml_form_of", "XML form of, Metathesaurus-asserted",
"multipart_of", "Multipart of",
"multiply_mapped_from", "Multiply mapped from",
"multiply_mapped_to", "Multiply mapped to",
"negatively_regulated_by", "Negatively regulated by",
"negatively_regulates", "Negatively regulates",
"neoplasm_has_special_category", "neoplasm has special category",
"nerve_supply_of", "Nerve supply of",
"nichd_parent_of", "nichd parent of",
"noun_form_of", "Noun form of",
"occurs_after", "Occurs after",
"occurs_before", "Occurs before",
"occurs_in", "Occurs in",
"onset_of", "Onset of",
"organism_has_gene", "organism has gene",
"origin_of", "Origin of",
"other_mapped_from", "Other mapped from",
"other_mapped_to", "Other mapped to",
"owning_affiliate_of", "Owning affiliate of",
"owning_section_of", "Owning section of",
"owning_subsection_of", "Owning subsection of",
"panel_element_of_possibly_included", "CPT laboratory panel test member is possibly included element of laboratory code",
"panel_element_of", "CPT laboratory panel test member is element of laboratory code",
"parent_group_of", "Parent group of",
"parent_of", "Parent of",
"part_anatomy_structure_of", "Part anatomy structure of",
"part_of", "Part of",
"part_referred_to_by", "Part referred to by",
"partially_excised_anatomy_has_procedure", "partially excised anatomy has procedure",
"partially_excised_anatomy_may_have_procedure", "partially excised anatomy may have procedure",
"pathogenesis_of_disease_involves_gene", "pathogenesis of disease involves gene",
"pathological_process_of", "Pathological process of",
"pathology_of_excluded", "Pathology of excluded",
"pathology_of_possibly_included", "Pathology of possibly included",
"pathology_of", "Pathology of",
"pathway_has_gene_element", "pathway has gene element",
"patient_type_of_excluded", "Patient type of excluded",
"patient_type_of_possibly_included", "Patient type of possibly included",
"patient_type_of", "Patient type of",
"permuted_term_of", "Permuted term of",
"pharmaceutical_administration_method_of", "pharmaceutical administration method of",
"pharmaceutical_basic_dose_form_of", "pharmaceutical basic dose form of",
"pharmaceutical_intended_site_of", "pharmaceutical intended site of",
"pharmaceutical_release_characteristics_of", "pharmaceutical release characteristics of",
"pharmaceutical_state_of_matter_of", "pharmaceutical state of matter of",
"pharmaceutical_transformation_of", "pharmaceutical transformation_of",
"pharmacokinetics_of", "Pharmacokinetics of",
"phenotype_of", "Phenotype of",
"physiologic_effect_of", "Physiologic effect of",
"physiologic_state_of", "Physiologic state of",
"plays_role", "Plays role",
"population_at_risk_for", "Population at risk for",
"positively_regulated_by", "Positively regulated by",
"positively_regulates", "Positively regulates",
"possibly_equivalent_to", "Possibly equivalent to",
"posterior_to", "posterior to",
"posteroinferior_to", "posteroinferior to",
"posterolateral_to", "posterolateral to",
"posteromedial_to", "posteromedial to",
"posterosuperior_to", "posterosuperior to",
"precise_active_ingredient_of", "Precise active ingredient of",
"precise_ingredient_of", "Precise ingredient of",
"precondition_of", "Precondition of",
"presentation_strength_denominator_unit_of", "Presentation strength denominator unit of",
"presentation_strength_denominator_value_of", "Presentation strength denominator value of",
"presentation_strength_numerator_unit_of", "Presentation strength numerator unit of",
"presentation_strength_numerator_value_of", "Presentation strength numerator value of",
"primary_mapped_from", "Primary mapped from",
"primary_mapped_to", "Primary mapped to",
"primary_segmental_supply_of", "Primary segmental supply of",
"print_name_of", "Print name of",
"priority_of", "Priority of",
"procedure_context_of", "Procedure context of",
"procedure_device_of_excluded", "Procedure device of excluded",
"procedure_device_of_possibly_included", "Procedure device of possibly included",
"procedure_device_of", "Procedure device of",
"procedure_has_completely_excised_anatomy", "procedure has completely excised anatomy",
"procedure_has_excised_anatomy", "procedure has excised anatomy",
"procedure_has_imaged_anatomy", "procedure has imaged anatomy",
"procedure_has_partially_excised_anatomy", "procedure has partially excised anatomy",
"procedure_has_tardoc_anatomy", "procedure has target anatomy",
"procedure_may_have_completely_excised_anatomy", "procedure may have completely excised anatomy",
"procedure_may_have_excised_anatomy", "procedure may have excised anatomy",
"procedure_may_have_partially_excised_anatomy", "procedure may have partially excised anatomy",
"procedure_morphology_of", "Procedure morphology of",
"procedure_site_of_excluded", "Procedure site of excluded",
"procedure_site_of_possibly_included", "Procedure site of possibly included",
"procedure_site_of", "Procedure site of",
"process_altered_by_allele", "process altered by allele",
"process_duration_of", "Process duration of",
"process_includes_biological_process", "process includes biological process",
"process_initiates_biological_process", "process initiates biological process",
"process_involves_gene", "process involves gene",
"process_output_of", "Process output of",
"product_monograph_title_of", "product monograph title of",
"projects_from", "projects from",
"projects_to", "projects to",
"property_of", "Property of",
"property_type_of", "Property type of",
"proximal_to", "proximal to",
"qualifier_applies_to", "qualifier applies to",
"quantified_form_of", "Quantified form of",
"realization_of", "Realization of",
"receives_attachment_from", "receives attachment from",
"receives_drainage_from", "receives drainage from",
"receives_input_from", "Receives input from",
"receives_projection", "receives projection",
"recipient_category_of", "Recipient category of",
"referred_to_by", "referred to by",
"refers_to", "refers to",
"reformulated_to", "Reformulated to",
"reformulation_of", "Reformulation of",
"regimen_has_accepted_use_for_disease", "Regimen Has Accepted Use For Disease",
"regional_part_of", "Regional part of",
"regulated_by", "Regulated by",
"regulates", "Regulates",
"related_developmental_entity_of", "related developmental entity of",
"related_factor_of", "Related factor of",
"related_object", "related object",
"related_part", "related part",
"related_to_genetic_biomarker", "related to genetic biomarker",
"related_to", "Is Related to",
"relative_to_part_of", "Relative to part of",
"replaced_by", "Replaced by",
"replaces", "Replaces",
"result_of", "Result of",
"revision_status_of", "Revision status of",
"right_lateral_to", "right lateral to",
"right_medial_to", "right medial to",
"risk_factor_of", "Risk factor of",
"role_has_domain", "role has domain",
"role_has_parent", "role has parent",
"role_has_range", "role has range",
"role_is_parent_of", "role is parent of",
"role_played_by", "Role played by",
"route_of_administration_of_excluded", "Route of administration of excluded",
"route_of_administration_of_possibly_included", "Route of administration of possibly included",
"route_of_administration_of", "Route of administration of",
"same_as", "Same as",
"scale_of", "Scale of",
"scale_type_of", "Scale type of",
"secondary_segmental_supply_of", "Secondary segmental supply of",
"see_from", "See from",
"see", "See",
"segmental_composition_of", "Segmental composition of",
"segmental_supply_of", "Segmental supply of",
"sends_output_to", "Sends output to",
"severity_of", "Severity of",
"sib_in_branch_of", "Sibling in branch of",
"sib_in_isa", "Sibling in is a",
"sib_in_part_of", "Sibling in part of",
"sib_in_tributary_of", "Sibling in tributary of",
"sign_or_symptom_of", "Sign or symptom of",
"site_of_metabolism", "Site of metabolism",
"smaller_than", "Smaller Than",
"sort_version_of", "Sort version of",
"special_category_includes_neoplasm", "special category includes neoplasm",
"specialty_of", "Specialty of",
"specimen_of_excluded", "Specimen of excluded",
"specimen_of", "Specimen of",
"specimen_procedure_of", "Specimen procedure of",
"specimen_source_identity_of", "Specimen source identity of",
"specimen_source_morphology_of", "Specimen source morphology of",
"specimen_source_topography_of", "specimen source topography of",
"specimen_substance_of", "Specimen substance of",
"ssc", "scc",
"stage_of", "Stage of",
"state_of_matter_of", "State of matter of",
"structural_class_of", "Has structural class",
"sub_specimen_included_by", "Sub specimen included by",
"subject_of_information_of", "Subject of information of",
"subject_relationship_context_of", "Subject relationship context of",
"subset_includes_concept", "subset includes concept",
"substance_used_by_excluded", "Substance used by excluded",
"substance_used_by_possibly_included", "Substance used by possibly included",
"substance_used_by", "Substance used by",
"suffix_of", "Suffix of",
"superior_to", "superior to",
"superolateral_to", "superolateral to",
"superomedial_to", "superomedial to",
"supersystem_of", "Supersystem of",
"supported_concept_property_in", "Supported concept property in",
"supported_concept_relationship_in", "Supported concept relationship in",
"surgical_approach_of", "surgical approach of",
"surgical_extent_of_excluded", "Surgical extent of excluded",
"surgical_extent_of_possibly_included", "Surgical extent of possibly included",
"surgical_extent_of", "Surgical extent of",
"surrounded_by", "Surrounded by",
"surrounds", "Surrounds",
"system_of", "System of",
"tardoc_anatomy_has_procedure", "target anatomy has procedure",
"technique_of", "Technique of",
"temporal_context_of", "Temporal context of",
"temporally_followed_by", "Temporally followed by",
"temporally_follows", "Temporally follows",
"temporally_related_to", "Temporally related to",
"therapeutic_class_of", "Therapeutic class of",
"time_aspect_of", "Time aspect of",
"time_modifier_of", "Time modifier of",
"tissue_is_expression_site_of_gene_product", "tissue is expression site of gene product",
"tradename_of", "Tradename of",
"transforms_from", "transforms from",
"transforms_into", "transforms into",
"translation_of", "Translation of",
"transliterated_form_of", "transliterated_form_of",
"treated_by", "Treated by",
"treats", "Treats",
"tributary_of", "Tributary of",
"uniquely_mapped_from", "Uniquely mapped from",
"uniquely_mapped_to", "Uniquely mapped to",
"unit_of_presentation_of", "Unit of presentation of",
"units_of", "Units of",
"used_by", "Used by",
"used_for", "Used for",
"uses_access_device", "Uses access device",
"uses_device", "Uses device",
"uses_energy", "Uses energy",
"uses_excluded_substance", "Uses excluded substance",
"uses_possibly_included_substance", "Uses possibly included substance",
"uses_substance", "Uses substance",
"uses", "Uses",
"use", "Use",
"venous_drainage_of", "Venous drainage of",
"version_of", "Version of",
"was_a", "Was a",
"wound_has_communication_with", "Wound has communication with",
"", "Empty relationship attribute"
),
SRL = tibble::tribble(
~SRL,~`SRL Description`,
"0", "No additional restrictions; general terms of the license agreement apply.",
"1", "General terms + additional restrictions in category 12.1",
"2", "General terms + additional restrictions in category 12.2",
"3", "General terms + additional restrictions in category 12.3",
"4", "General terms + additional restrictions in category 12.4",
"9", "General terms + SNOMED CT Affiliate License in Appendix 2"
),
STT = tibble::tribble(
~`STT (String Type)`,~`STT Description`,
"PF", "Preferred form of term",
"VCW", "Case and word-order variant of the preferred form",
"VC", "Case variant of the preferred form",
"VO", "Variant of the preferred form",
"VW", "Word-order variant of the preferred form"
),
STYPE = tibble::tribble(
~`STYPE (Column name in MRCONSO.RRF or MRREL.RRF with identifier to which attribute is attached)`,~`STYPE Description`,
"AUI", "Atom identifier",
"CODE", "Unique Identifier or code for string in source",
"CUI", "Concept unique identifier",
"RUI", "Relationship identifier",
"SCUI", "Source asserted concept unique identifier",
"SDUI", "Source asserted descriptor identifier"
),
STYPE1 = tibble::tribble(
~`STYPE1 (Column name in MRCONSO.RRF with first identifier to which relationship is attached)`,~`STYPE1 Description`,
"AUI", "Atom identifier",
"CODE", "Unique Identifier or code for string in source",
"CUI", "Concept unique identifier",
"SCUI", "Source asserted concept unique identifier",
"SDUI", "Source asserted descriptor identifier"
),
STYPE2 = tibble::tribble(
~`STYPE2 (Column name in MRCONSO.RRF with second identifier to which relationship is attached)`,~`STYPE2 Description`,
"AUI", "Atom identifier",
"CODE", "Unique Identifier or code for string in source",
"CUI", "Concept unique identifier",
"SCUI", "Source asserted concept unique identifier",
"SDUI", "Source asserted descriptor identifier"
),
SUPPRESS = tibble::tribble(
~SUPPRESS,~`SUPPRESS Description`,
"E", "Suppressible due to editor decision",
"N", "Not suppressible",
"O", "Obsolete, SAB,TTY may be independently suppressible",
"Y", "Suppressible due to SAB,TTY",
"", "Suppressibility not yet assigned by the UMLS"
),
TOTYPE = tibble::tribble(
~`TOTYPE (Type of Expression to Which a Mapping is Mapped)`,~`TOTYPE Description`,
"BOOLEAN_EXPRESSION_CODE", "Boolean expression of CODE values",
"BOOLEAN_EXPRESSION_SDUI", "Boolean expression of SDUI values",
"BOOLEAN_EXPRESSION_STR", "Boolean expression of STR values",
"CODE", "Unique Identifier or code for string in source",
"SCUI", "Source asserted concept unique identifier",
"SDUI", "Source asserted descriptor identifier",
"", "No type, used for XR mappings."
),
TS = tibble::tribble(
~`TS (Term Status)`,~`TS Description`,
"P", "Preferred LUI of the CUI",
"S", "Non-Preferred LUI of the CUI",
"p", "Preferred LUI of the CUI, suppressible (only used in ORF MRCON)",
"s", "Non-Preferred LUI of the CUI, suppressible (only used in ORF MRCON)"
),
TTY = tibble::tribble(
~`TTY (Term Type in Source)`,~`TTY Description`,
"AA", "Attribute type abbreviation",
"AB", "Abbreviation in any source vocabulary",
"ACR", "Acronym",
"AC", "Activities",
"AD", "Adjective",
"AM", "Short form of modifier",
"AS", "Attribute type synonym",
"AT", "Attribute type",
"AUN", "Authority name",
"BD", "Fully-specified drug brand name that can be prescribed",
"BN", "Fully-specified drug brand name that can not be prescribed",
"BPCK", "Branded Drug Delivery Device",
"BR", "Binding realm",
"CA2", "ISO 3166-1 standard country code in alpha-2 (two-letter) format",
"CA3", "ISO 3166-1 standard country code in alpha-3 (three-letter) format",
"CCN", "Chemical code name",
"CCS", "FIPS 10-4 country code",
"CC", "Trimmed ICPC component process",
"CDA", "Clinical drug name in abbreviated format",
"CDC", "Clinical drug name in concatenated format (NDDF), Clinical drug name (NDFRT)",
"CDD", "Clinical drug name in delimited format",
"CDO", "Concept domain",
"CD", "Clinical Drug",
"CE", "Entry term for a Supplementary Concept",
"CHN", "Chemical structure name",
"CL", "Class",
"CMN", "Common name",
"CN", "LOINC official component name",
"CO", "Component name (these are hierarchical terms, as opposed to the LOINC component names which are analytes)",
"CPR", "Concept property",
"CP", "ICPC component process (in original form)",
"CR", "Concept relationship",
"CSN", "Chemical Structure Name",
"CSY", "Code system",
"CS", "Short component process in ICPC, i.e. include some abbreviations",
"CU", "Common usage",
"CV", "Content view",
"CX", "Component, with abbreviations expanded.",
"DC10", "Diagnostic criteria for ICD10 code",
"DC9", "Diagnostic criteria for ICD9 code",
"DEV", "Descriptor entry version",
"DE", "Descriptor",
"DFG", "Dose Form Group",
"DF", "Dose Form",
"DI", "Disease name",
"DN", "Display Name",
"DO", "Domain",
"DP", "Drug Product",
"DSV", "Descriptor sort version",
"DS", "Short form of descriptor",
"DT", "Definitional term, present in the Metathesaurus because of its connection to a Dorlands definition or to a definition created especially for the Metathesaurus",
"EP", "Print entry term",
"EQ", "Equivalent name",
"ES", "Short form of entry term",
"ETAL", "Entry Term Alias",
"ETCF", "Entry term, consumer friendly description",
"ETCLIN", "Entry term, clinician description",
"ET", "Entry term",
"EX", "Expanded form of entry term",
"FBD", "Foreign brand name",
"FI", "Finding name",
"FN", "Full form of descriptor",
"FSY", "Foreign Synonym",
"GLP", "Global period",
"GN", "Generic drug name",
"GO", "Goal",
"GPCK", "Generic Drug Delivery Device",
"GT", "Glossary term",
"HC", "Hierarchical class",
"HD", "Hierarchical descriptor",
"HGJKN1", "Japanese High Level Group Term (kana1)",
"HGJKN", "Japanese High Level Group Term (kana)",
"HG", "High Level Group Term",
"HS", "Short or alternate version of hierarchical term",
"HTJKN1", "Japanese Hierarchical term (kana1)",
"HTJKN", "Japanese Hierarchical term (kana)",
"HTN", "HL7 Table Name",
"HT", "Hierarchical term",
"HX", "Expanded version of short hierarchical term",
"ID", "Nursing indicator",
"IN", "Name for an ingredient",
"IS", "Obsolete Synonym",
"IT", "Index term",
"IVC", "Intervention categories",
"IV", "Intervention",
"LA", "LOINC answer",
"LC", "Long common name",
"LG", "LOINC group",
"LLTJKN1", "Japanese Lower Level Term (kana1)",
"LLTJKN", "Japanese Lower Level Term (kana)",
"LLT", "Lower Level Term",
"LN", "LOINC official fully specified name",
"LO", "Obsolete official fully specified name",
"LPDN", "LOINC parts display name",
"LPN", "LOINC parts name",
"LS", "Expanded system/sample type (The expanded version was created for the Metathesaurus and includes the full name of some abbreviations.)",
"LVDN", "Linguistic variant display name",
"LV", "Lexical variant",
"MD", "CCS multi-level diagnosis categories",
"MH", "Main heading",
"MIN", "name for a multi-ingredient",
"MP", "Preferred names of modifiers",
"MS", "Multum names of branded and generic supplies or supplements",
"MTH_ACR", "MTH acronym",
"MTH_CN", "MTH Component, with abbreviations expanded.",
"MTH_ET", "Metathesaurus entry term",
"MTH_FN", "MTH Full form of descriptor",
"MTH_HG", "MTH High Level Group Term",
"MTH_HT", "MTH Hierarchical term",
"MTH_HX", "MTH Hierarchical term expanded",
"MTH_IS", "Metathesaurus-supplied form of obsolete synonym",
"MTH_LLT", "MTH Lower Level Term",
"MTH_LN", "MTH Official fully specified name with expanded abbreviations",
"MTH_LO", "MTH Expanded LOINC obsolete fully specified name",
"MTH_OAF", "Metathesaurus-supplied form of obsolete active fully specified name",
"MTH_OAP", "Metathesaurus-supplied form of obsolete active preferred term",
"MTH_OAS", "Metathesaurus-supplied form of obsolete active synonym",
"MTH_OET", "Metathesaurus obsolete entry term",
"MTH_OF", "Metathesaurus-supplied form of obsolete fully specified name",
"MTH_OL", "MTH Non-current Lower Level Term",
"MTH_OPN", "Metathesaurus obsolete preferred term, natural language form",
"MTH_OP", "Metathesaurus obsolete preferred term",
"MTH_OS", "MTH System-organ class",
"MTH_PTGB", "Metathesaurus-supplied form of British preferred term",
"MTH_PTN", "Metathesaurus preferred term, natural language form",
"MTH_PT", "Metathesaurus preferred term",
"MTH_RXN_BD", "RxNorm Created BD",
"MTH_RXN_CDC", "RxNorm Created CDC",
"MTH_RXN_CD", "RxNorm Created CD",
"MTH_RXN_DP", "RxNorm Created DP",
"MTH_SI", "MTH Sign or symptom of",
"MTH_SMQ", "Metathesaurus version of Standardised MedDRA Query",
"MTH_SYGB", "Metathesaurus-supplied form of British synonym",
"MTH_SY", "MTH Designated synonym",
"MV", "Multi-level procedure category",
"N1", "Chemical Abstracts Service Type 1 name of a chemical",
"NA", "Name aliases",
"NM", "Name of Supplementary Concept",
"NPT", "HL7 non-preferred for language term",
"NP", "Non-preferred term",
"NS", "Short form of non-preferred term",
"NX", "Expanded form of non-preferred term",
"OAF", "Obsolete active fully specified name",
"OAM", "Obsolete Modifier Abbreviation",
"OAP", "Obsolete active preferred term",
"OAS", "Obsolete active synonym",
"OA", "Obsolete abbreviation",
"OC", "Nursing outcomes",
"OET", "Obsolete entry term",
"OF", "Obsolete fully specified name",
"OLC", "Obsolete Long common name",
"OLG", "Obsolete LOINC group name",
"OLJKN1", "Japanese Non-current Lower Level Term (kana1)",
"OLJKN", "Japanese Non-current Lower Level Term (kana)",
"OL", "Non-current Lower Level Term",
"OM", "Obsolete modifiers in HCPCS",
"ONP", "Obsolete non-preferred for language term",
"OOSN", "Obsolete official short name",
"OPN", "Obsolete preferred term, natural language form",
"OP", "Obsolete preferred name",
"OR", "Orders",
"OSJKN1", "Japanese System-organ class in the WHO Adverse Reaction Terminology (kana1)",
"OSJKN", "Japanese System-organ class in the WHO Adverse Reaction Terminology (kana)",
"OSN", "Official short name",
"OS", "System-organ class",
"PCE", "Preferred entry term for Supplementary Concept",
"PC", "Preferred trimmed term in ICPC",
"PEP", "Preferred entry term",
"PHENO_ET", "Phenotype entry term",
"PHENO", "Phenotype",
"PIN", "Name from a precise ingredient",
"PM", "Machine permutation",
"PN", "Metathesaurus preferred name",
"POS", "Place of service",
"PQ", "Qualifier for a problem",
"PR", "Name of a problem",
"PSC", "Protocol selection criteria",
"PSN", "Prescribable Names",
"PS", "Short forms that needed full specification",
"PTAV", "Preferred Allelic Variant",
"PTCS", "Preferred Clinical Synopsis",
"PTGB", "British preferred term",
"PTJKN1", "Japanese Designated preferred name (kana1)",
"PTJKN", "Japanese Designated preferred name (kana)",
"PTN", "Preferred term, natural language form",
"PT", "Designated preferred name",
"PXQ", "Preferred qualifier term",
"PX", "Expanded preferred terms (pair with PS)",
"QAB", "Qualifier abbreviation",
"QEV", "Qualifier entry version",
"QSV", "Qualifier sort version",
"RAB", "Root abbreviation",
"RHT", "Root hierarchical term",
"RPT", "Root preferred term",
"RSY", "Root synonym",
"RS", "Extracted related names in SNOMED2",
"RT", "Term that is related to, but often considered non-synonymous with, the preferred term",
"RXN_IN", "Rxnorm Preferred Ingredient",
"RXN_PT", "Rxnorm Preferred",
"SBDC", "Semantic Branded Drug Component",
"SBDF", "Semantic branded drug and form",
"SBDG", "Semantic branded drug group",
"SBD", "Semantic branded drug",
"SB", "Named subset of a source",
"SCALE", "Scale",
"SCDC", "Semantic Drug Component",
"SCDF", "Semantic clinical drug and form",
"SCDG", "Semantic clinical drug group",
"SCD", "Semantic Clinical Drug",
"SCN", "Scientific name",
"SC", "Special Category term",
"SD", "CCS single-level diagnosis categories",
"SI", "Name of a sign or symptom of a problem",
"SMQ", "Standardised MedDRA Query",
"SP", "CCS single-level procedure categories",
"SSN", "Source short name, used in the UMLS Knowledge Source Server",
"SS", "Synonymous short forms",
"ST", "Step",
"SU", "Active Substance",
"SX", "Mixed-case component synonym with expanded abbreviations",
"SYGB", "British synonym",
"SYN", "Designated alias",
"SY", "Designated synonym",
"TA", "Task",
"TC", "Term class",
"TG", "Name of the target of an intervention",
"TMSY", "Tall Man synonym",
"TQ", "Topical qualifier",
"TX", "CCPSS synthesized problems for TC termgroup",
"UAUN", "Unique authority name",
"UCN", "Unique common name",
"UE", "Unique equivalent name",
"USN", "Unique scientific name",
"USY", "Unique synonym",
"VAB", "Versioned abbreviation",
"VPT", "Versioned preferred term",
"VSY", "Versioned synonym",
"VS", "Value Set",
"XD", "Expanded descriptor in AOD",
"XM", "Cross mapping set",
"XQ", "Alternate name for a qualifier"
),
TTY = tibble::tribble(
~`TTY (tty_class)`,~`TTY (tty_class) Description`,
"AA", "abbreviation",
"AA", "attribute",
"AB", "abbreviation",
"ACR", "abbreviation",
"AC", "preferred",
"AD", "attribute",
"AM", "abbreviation",
"AM", "attribute",
"AS", "attribute",
"AS", "synonym",
"AT", "attribute",
"AUN", "synonym",
"BD", "preferred",
"BN", "preferred",
"BPCK", "preferred",
"BR", "preferred",
"CA2", "abbreviation",
"CA3", "abbreviation",
"CCN", "synonym",
"CCS", "synonym",
"CC", "preferred",
"CDA", "abbreviation",
"CDC", "preferred",
"CDD", "synonym",
"CDO", "preferred",
"CD", "preferred",
"CE", "entry_term",
"CHN", "synonym",
"CL", "hierarchical",
"CMN", "preferred",
"CN", "preferred",
"CO", "hierarchical",
"CPR", "preferred",
"CP", "preferred",
"CR", "preferred",
"CSN", "synonym",
"CS", "abbreviation",
"CSY", "preferred",
"CU", "synonym",
"CV", "preferred",
"CX", "expanded",
"CX", "preferred",
"DC10", "preferred",
"DC9", "preferred",
"DE", "preferred",
"DEV", "abbreviation",
"DFG", "preferred",
"DF", "preferred",
"DI", "preferred",
"DN", "synonym",
"DO", "hierarchical",
"DP", "preferred",
"DS", "abbreviation",
"DSV", "abbreviation",
"DT", "other",
"EP", "entry_term",
"EQ", "synonym",
"ES", "abbreviation",
"ES", "entry_term",
"ETAL", "entry_term",
"ETCF", "entry_term",
"ETCLIN", "entry_term",
"ET", "entry_term",
"EX", "entry_term",
"EX", "expanded",
"FBD", "synonym",
"FI", "preferred",
"FN", "preferred",
"FSY", "synonym",
"GLP", "preferred",
"GN", "preferred",
"GO", "preferred",
"GPCK", "preferred",
"GT", "entry_term",
"HC", "hierarchical",
"HD", "hierarchical",
"HGJKN1", "hierarchical",
"HGJKN", "hierarchical",
"HG", "hierarchical",
"HS", "abbreviation",
"HS", "hierarchical",
"HTJKN1", "hierarchical",
"HTJKN1", "preferred",
"HTJKN", "hierarchical",
"HTJKN", "preferred",
"HTN", "preferred",
"HT", "hierarchical",
"HT", "preferred",
"HX", "expanded",
"HX", "hierarchical",
"ID", "abbreviation",
"ID", "preferred",
"IN", "preferred",
"IS", "obsolete",
"IS", "synonym",
"IT", "entry_term",
"IVC", "preferred",
"IV", "preferred",
"LA", "preferred",
"LC", "preferred",
"LG", "preferred",
"LLTJKN1", "entry_term",
"LLTJKN", "entry_term",
"LLT", "entry_term",
"LN", "preferred",
"LO", "obsolete",
"LPDN", "preferred",
"LPN", "preferred",
"LS", "expanded",
"LVDN", "preferred",
"LV", "synonym",
"MD", "preferred",
"MH", "preferred",
"MIN", "preferred",
"MP", "attribute",
"MS", "preferred",
"MTH_ACR", "abbreviation",
"MTH_CN", "expanded",
"MTH_CN", "preferred",
"MTH_ET", "entry_term",
"MTH_FN", "preferred",
"MTH_HG", "hierarchical",
"MTH_HT", "hierarchical",
"MTH_HX", "hierarchical",
"MTH_IS", "obsolete",
"MTH_IS", "synonym",
"MTH_LLT", "entry_term",
"MTH_LN", "expanded",
"MTH_LN", "preferred",
"MTH_LO", "expanded",
"MTH_LO", "obsolete",
"MTH_LO", "synonym",
"MTH_OAF", "obsolete",
"MTH_OAP", "obsolete",
"MTH_OAP", "preferred",
"MTH_OAS", "obsolete",
"MTH_OAS", "synonym",
"MTH_OET", "entry_term",
"MTH_OET", "obsolete",
"MTH_OF", "obsolete",
"MTH_OL", "entry_term",
"MTH_OL", "obsolete",
"MTH_OPN", "obsolete",
"MTH_OPN", "preferred",
"MTH_OP", "obsolete",
"MTH_OP", "preferred",
"MTH_OS", "hierarchical",
"MTH_PTGB", "preferred",
"MTH_PTN", "preferred",
"MTH_PT", "expanded",
"MTH_PT", "preferred",
"MTH_RXN_BD", "preferred",
"MTH_RXN_CDC", "preferred",
"MTH_RXN_CD", "preferred",
"MTH_RXN_DP", "preferred",
"MTH_SI", "preferred",
"MTH_SMQ", "preferred",
"MTH_SYGB", "synonym",
"MTH_SY", "synonym",
"MV", "preferred",
"N1", "synonym",
"NA", "preferred",
"NM", "preferred",
"NPT", "synonym",
"NP", "synonym",
"NS", "abbreviation",
"NS", "synonym",
"NX", "expanded",
"NX", "synonym",
"OAF", "obsolete",
"OAM", "abbreviation",
"OAM", "attribute",
"OAM", "obsolete",
"OAP", "obsolete",
"OAS", "obsolete",
"OA", "abbreviation",
"OA", "obsolete",
"OC", "preferred",
"OET", "entry_term",
"OET", "obsolete",
"OF", "obsolete",
"OLC", "obsolete",
"OLG", "obsolete",
"OLJKN1", "entry_term",
"OLJKN1", "obsolete",
"OLJKN", "entry_term",
"OLJKN", "obsolete",
"OL", "entry_term",
"OL", "obsolete",
"OM", "attribute",
"OM", "obsolete",
"ONP", "obsolete",
"ONP", "synonym",
"OOSN", "obsolete",
"OPN", "obsolete",
"OPN", "preferred",
"OP", "obsolete",
"OP", "preferred",
"OR", "preferred",
"OSJKN1", "hierarchical",
"OSJKN", "hierarchical",
"OSN", "abbreviation",
"OSN", "preferred",
"OS", "hierarchical",
"PCE", "entry_term",
"PCE", "preferred",
"PC", "preferred",
"PEP", "entry_term",
"PEP", "preferred",
"PHENO_ET", "entry_term",
"PHENO", "preferred",
"PIN", "preferred",
"PM", "synonym",
"PN", "preferred",
"POS", "preferred",
"PQ", "attribute",
"PR", "preferred",
"PSC", "preferred",
"PSN", "preferred",
"PS", "abbreviation",
"PTAV", "preferred",
"PTCS", "preferred",
"PTGB", "preferred",
"PTJKN1", "preferred",
"PTJKN", "preferred",
"PTN", "preferred",
"PT", "preferred",
"PXQ", "attribute",
"PXQ", "entry_term",
"PX", "expanded",
"PX", "preferred",
"QAB", "abbreviation",
"QEV", "abbreviation",
"QSV", "abbreviation",
"RAB", "abbreviation",
"RHT", "hierarchical",
"RPT", "preferred",
"RS", "other",
"RSY", "synonym",
"RT", "other",
"RXN_IN", "preferred",
"RXN_PT", "preferred",
"SBDC", "preferred",
"SBDF", "preferred",
"SBDG", "preferred",
"SBD", "preferred",
"SB", "other",
"SCALE", "attribute",
"SCDC", "preferred",
"SCDF", "preferred",
"SCDG", "preferred",
"SCD", "preferred",
"SCN", "preferred",
"SC", "other",
"SD", "preferred",
"SI", "preferred",
"SMQ", "preferred",
"SP", "preferred",
"SSN", "abbreviation",
"SS", "abbreviation",
"SS", "synonym",
"ST", "preferred",
"SU", "preferred",
"SX", "expanded",
"SX", "synonym",
"SYGB", "synonym",
"SYN", "synonym",
"SY", "synonym",
"TA", "preferred",
"TC", "hierarchical",
"TG", "preferred",
"TMSY", "synonym",
"TQ", "attribute",
"TQ", "preferred",
"TX", "hierarchical",
"UAUN", "synonym",
"UCN", "preferred",
"UE", "synonym",
"USN", "preferred",
"USY", "synonym",
"VAB", "abbreviation",
"VPT", "preferred",
"VS", "preferred",
"VSY", "synonym",
"XD", "expanded",
"XD", "preferred",
"XM", "other",
"XQ", "attribute",
"XQ", "synonym"
)
)
}
patelm9/metaorite documentation built on Dec. 29, 2021, 4:37 a.m.
R Package Documentation
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Defines functions doc_field_value_annotation doc_sab_annotation doc_fields_to_table_map doc_field_definitions doc_mrconso_field_definitions doc_readable_table_names
Documented in doc_field_definitions doc_fields_to_table_map doc_field_value_annotation doc_mrconso_field_definitions doc_readable_table_names doc_sab_annotation
#' @title
#' Metathesaurus Documentation Functions
#'
#' @description
#' Return the information avaible in the UML Web Documentation in dataframe format
#'
#' @name mth_documentation_functions
#' @noRd
NULL
#' @title
#' List the Human Readable Names for the Tables
#' @seealso
#' \code{\link[tibble]{tribble}}
#' @export
#' @importFrom tibble tribble
doc_readable_table_names <-
function() {
tibble::tribble(
~Table,~RRF,
"Files", "MRFILES.RRF",
"Data Elements", "MRCOLS.RRF",
"Documentation for Abbreviated Values", "MRDOC.RRF",
"Concept Names and Sources", "MRCONSO.RRF",
"Simple Concept and Atom Attributes", "MRSAT.RRF",
"Definitions", "MRDEF.RRF",
"Semantic Types", "MRSTY.RRF",
"History", "MRHIST.RRF",
"Related Concepts", "MRREL.RRF",
"Computable Hierarchies", "MRHIER.RRF",
"Contexts", "MRCXT.RRF",
"Mappings", "MRMAP.RRF",
"Simple Mappings", "MRSMAP.RRF",
"Source Information", "MRSAB.RRF",
"Concept Name Ranking", "MRRANK.RRF",
"Ambiguous Term Identifiers", "AMBIGLUI.RRF",
"Ambiguous String Identifiers", "AMBIGSUI.RRF",
"Word Index", "MRXW_BAQ.RRF, MRXW_DAN.RRF, MRXW_DUT.RRF, MRXW_ENG.RRF, MRXW_FIN.RRF, MRXW_FRE.RRF, MRXW_GER.RRF, MRXW_HEB.RRF, MRXW_HUN.RRF, MRXW_ITA.RRF, MRXW_NOR.RRF, MRXW_POR.RRF, MRXW_RUS.RRF, MRXW_SPA.RRF, MRXW_SWE.RRF",
"Normalized Word Index", "MRXNW_ENG.RRF",
"Normalized String Index", "MRXNS_ENG.RRF")
}
#' @title
#' Get Field Definitions for the MRCONSO Table
#' @seealso
#' \code{\link[tibble]{tribble}}
#' @export
#' @importFrom tibble tribble
doc_mrconso_field_definitions <-
function() {
tibble::tribble(~Col,~Description,
"CUI", "Unique identifier for concept",
"LAT", "Language of term",
"TS", "Term status",
"LUI", "Unique identifier for term",
"STT", "String type",
"SUI", "Unique identifier for string",
"ISPREF", "Atom status - preferred (Y) or not (N) for this string within this concept",
"AUI", "Unique identifier for atom - variable length field, 8 or 9 characters",
"SAUI", "Source asserted atom identifier [optional]",
"SCUI", "Source asserted concept identifier [optional]",
"SDUI", "Source asserted descriptor identifier [optional]",
"SAB", "Abbreviated source name (SAB). Maximum field length is 20 alphanumeric characters. Two source abbreviations are assigned:
Root Source Abbreviation (RSAB) — short form, no version information, for example, AI/RHEUM, 1993, has an RSAB of 'AIR' Versioned Source Abbreviation (VSAB) — includes version information, for example, AI/RHEUM, 1993, has an VSAB of 'AIR93' Official source names, RSABs, and VSABs are included on the UMLS Source Vocabulary Documentation page.",
"TTY", "Abbreviation for term type in source vocabulary, for example PN (Metathesaurus Preferred Name) or CD (Clinical Drug). Possible values are listed on the Abbreviations Used in Data Elements page.",
"CODE", "Most useful source asserted identifier (if the source vocabulary has more than one identifier), or a Metathesaurus-generated source entry identifier (if the source vocabulary has none)",
"STR", "String",
"SRL", "Source restriction level",
"SUPPRESS", "Suppressible flag. Values = O, E, Y, or NO: All obsolete content, whether they are obsolesced by the source or by NLM. These will include all atoms having obsolete TTYs, and other atoms becoming obsolete that have not acquired an obsolete TTY (e.g. RxNorm SCDs no longer associated with current drugs, LNC atoms derived from obsolete LNC concepts). E: Non-obsolete content marked suppressible by an editor. These do not have a suppressible SAB/TTY combination.Y: Non-obsolete content deemed suppressible during inversion. These can be determined by a specific SAB/TTY combination explicitly listed in MRRANK.N: None of the aboveDefault suppressibility as determined by NLM (i.e., no changes at the Suppressibility tab in MetamorphoSys) should be used by most users, but may not be suitable in some specialized applications. See the MetamorphoSys Help page for information on how to change the SAB/TTY suppressibility to suit your requirements. NLM strongly recommends that users not alter editor-assigned suppressibility, and MetamorphoSys cannot be used for this purpose.",
"CVF", "Content View Flag. Bit field used to flag rows included in Content View. This field is a varchar field to maximize the number of bits available for use.")
}
#' @title
#' Get All Available Field Definitions
#'
#' @description
#' Sourced from \href{https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/columns_data_elements.html}{https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/columns_data_elements.html}
#'
#' @seealso
#' \code{\link[tibble]{tribble}}
#' @export
#' @importFrom tibble tribble
doc_field_definitions <-
function() {
tibble::tribble(
~Abbreviation,~Description,~Datatype,
"ATN", "Attribute name", "varchar(100)",
"ATNL", "Attribute name list for a source.", "varchar(4000)",
"ATUI", "Unique identifier for attribute.", "varchar(11)",
"ATV", "Attribute value", "varchar(65000)",
"AUI", "Unique identifier for atom", "varchar(9)",
"AUI1", "Unique identifier for first atom", "varchar(9)",
"AUI2", "Unique identifier for second atom", "varchar(9)",
"AV", "Average Length, Characters", "numeric(5,2)",
"BTS", "Size in Bytes", "integer",
"CENC", "Character encoding of a source as specified by IANA", "varchar(20)",
"CFR", "CUI frequency for a source", "integer",
"CHANGEKEY", "CONCEPTSTATUS (if history relates to a SNOMED CT concept) or DESCRIPTIONSTATUS (if history relates to a SNOMED CT atom or description)", "varchar(1000)",
"CHANGETYPE", "Source asserted code for type of change", "varchar(1000)",
"CHANGEVAL", "SNOMED CT CONCEPTSTATUS or DESCRIPTIONSTATUS value after the change took place", "varchar(1000)",
"CLS", "Number of columns", "integer",
"CODE", "Unique Identifier or code for string in source", "varchar(100)",
"COL", "Column or data element name", "varchar(20)",
"CUI", "Unique identifier for concept", "char(8)",
"CUI1", "Unique identifier for first concept", "char(8)",
"CUI2", "Unique identifier for second concept", "char(8)",
"CURVER", "Current Version flag", "char(1)",
"CVF", "Content view flag", "varchar(50)",
"CXN", "The context number if the atom has multiple contexts", "integer",
"CXTY", "Context type for a source", "varchar(50)",
"DEF", "Definition", "varchar(16000)",
"DES", "Descriptive Name", "varchar(200)",
"DIR", "Source asserted directionality flag", "varchar(1)",
"DOCKEY", "Key to be documented", "varchar(50)",
"DTY", "SQL-92 data type for this column", "varchar(20)",
"EXPL", "Detailed explanation", "varchar(1000)",
"FIL", "Physical FILENAME", "varchar(50)",
"FMT", "Comma separated list of COL", "varchar(300)",
"FROMEXPR", "The expression that a mapping is mapped from", "varchar(4000)",
"FROMID", "Metathesaurus identifier for the entity being mapped from", "varchar(50)",
"FROMRES", "Restriction applicable to the entity being mapped from", "varchar(4000)",
"FROMRULE", "Machine processible rule applicable to the entity being mapped from", "varchar(4000)",
"FROMSID", "Source asserted identifier for the entity being mapped from", "varchar(50)",
"FROMTYPE", "The type of expression that a mapping is mapped from", "varchar(50)",
"HCD", "Source asserted hierarchical number or code of context member (if it exists)", "varchar(100)",
"IMETA", "Version of the Metathesaurus that a source was added", "varchar(10)",
"ISPREF", "Indicates whether AUI is preferred", "char(1)",
"LAT", "Language of Term(s)", "char(3)",
"LUI", "Unique identifier for term", "varchar(10)",
"MAPATN", "Mapping attribute name (for future use)", "varchar(20)",
"MAPATV", "Mapping attribute value (for future use)", "varchar(4000)",
"MAPID", "Metathesaurus asserted identifier for mapping", "varchar(50)",
"MAPIN", "Mapping in current subset", "char(1)",
"MAPRANK", "Order in which mappings in a subset should be applied", "integer",
"MAPREASON", "Reason for mapping", "varchar(4000)",
"MAPRES", "Restriction applicable to this mapping", "varchar(4000)",
"MAPRULE", "Machine processible rule applicable to this mapping", "varchar(4000)",
"MAPSETCUI", "CUI of the map set", "char(8)",
"MAPSETSAB", "SAB of the map set", "varchar(40)",
"MAPSID", "Source asserted identifier for mapping", "varchar(50)",
"MAPSUBSETID", "Map subset identifier used to identify a subset of related mappings within a map set", "varchar(10)",
"MAPTYPE", "Type of mapping", "varchar(50)",
"MAX", "Maximum Length", "integer",
"METAUI", "Metathesaurus asserted unique identifier", "varchar(50)",
"MIN", "Minimum Length", "integer",
"NSTR", "Normalized string", "varchar(3000)",
"NWD", "Normalized word", "varchar(100)",
"PAUI", "Unique identifier for parent atom", "varchar(9)",
"PCUI", "Concept unique identifier in the previous Metathesaurus", "char(8)",
"PLUI", "Lexical unique identifier in the previous Metathesaurus", "varchar(10)",
"PSTR", "Preferred name in the previous Metathesaurus", "varchar(3000)",
"PSUI", "String unique identifier in the previous Metathesaurus", "varchar(10)",
"PTR", "Path to root", "varchar(1000)",
"RANK", "Termgroup ranking", "integer",
"RCUI", "Unique identifier for root SRC concept", "char(8)",
"REASON", "Explanation of change, if present", "varchar(1000)",
"REF", "Documentation Section Number", "varchar(20)",
"REL", "Relationship label", "varchar(4)",
"RELA", "Additional relationship label", "varchar(100)",
"RG", "Relationship group", "varchar(10)",
"RMETA", "Version of the Metathesaurus where a version is removed", "varchar(10)",
"RSAB", "Root source abbreviation", "varchar(40)",
"RUI", "Unique identifier for relationship", "varchar(10)",
"RWS", "Number of rows", "integer",
"SAB", "Source abbreviation", "varchar(40)",
"SABIN", "Source in current subset", "char(1)",
"SATUI", "Source asserted attribute identifier", "varchar(50)",
"SAUI", "Source asserted atom identifier", "varchar(50)",
"SCC", "Content contact info for a source", "varchar(1000)",
"SCIT", "Source citation", "varchar(4000)",
"SCUI", "Source asserted concept identifier", "varchar(50)",
"SDUI", "Source asserted descriptor identifier", "varchar(50)",
"SF", "Source Family", "varchar(40)",
"SL", "Source of relationship labels", "varchar(40)",
"SLC", "License contact info for a source", "varchar(1000)",
"SON", "Source Official Name", "varchar(3000)",
"SOURCEUI", "Source asserted unique identifier", "varchar(50)",
"SRL", "Source Restriction Level", "integerinteger",
"SRUI", "Source attributed relationship identifier", "varchar(50)",
"SSN", "Source short name", "varchar(3000)",
"STN", "Semantic type tree number", "varchar(100)",
"STR", "String", "varchar(3000)",
"STT", "String type", "varchar(3)",
"STY", "Semantic type", "varchar(50)",
"STYPE", "The name of the column in MRCONSO.RRF or MRREL.RRF that contains the identifier to which the attribute is attached", "varchar(50)",
"STYPE1", "The name of the column in MRCONSO.RRF that contains the first identifier to which the relationship is attached", "varchar(50)",
"STYPE2", "The name of the column in MRCONSO.RRF that contains the second identifier to which the relationship is attached", "varchar(50)",
"SUI", "Unique identifier for string", "varchar(10)",
"SUPPRESS", "Suppressible flag", "char(1)",
"SVER", "Release date or version number of a source", "varchar(20)",
"TFR", "Term frequency for a source", "integer",
"TOEXPR", "The expression that a mapping is mapped to", "varchar(4000)",
"TOID", "Metathesaurus identifier for the entity being mapped to", "varchar(50)",
"TORES", "Restriction applicable to the entity being mapped to", "varchar(4000)",
"TORULE", "Machine processible rule applicable to the entity being mapped to", "varchar(4000)",
"TOSID", "Source asserted identifier for the entity being mapped to", "varchar(50)",
"TOTYPE", "The type of expression that a mapping is mapped to", "varchar(50)",
"TS", "Term status", "char(1)",
"TTY", "Term type in source", "varchar(20)",
"TTYL", "Term type list for a source", "varchar(400)",
"TUI", "Unique identifier of Semantic type", "char(4)",
"TYPE", "Type of information", "varchar(50)",
"VALUE", "Value", "varchar(200)",
"VCUI", "Unique identifier for versioned SRC concept", "char(8)",
"VEND", "Valid end date for a source", "char(8)",
"VER", "Last release version in which CUI1 was valid", "varchar(10)",
"VSAB", "Versioned source abbreviation", "varchar(40)",
"VSTART", "Valid start date for a source", "char(8)",
"WD", "Word in lower-case", "varchar(500)"
)
}
#' @title
#' Get a Map From Fields to Tables
#' @export
#' @importFrom tibble tribble
doc_fields_to_table_map <-
function() {
tibble::tribble(
~Abbreviation,~Table,
"ATN", "MRSAT",
"ATNL", "MRSAB",
"ATUI", "MRSTY",
"ATUI", "MRSAT",
"ATUI", "MRDEF",
"ATV", "MRSAT",
"AUI", "MRHIER",
"AUI", "MRDEF",
"AUI", "MRCONSO",
"AUI1", "MRREL",
"AUI1", "MRAUI",
"AUI2", "MRREL",
"AUI2", "MRAUI",
"AV", "MRCOLS",
"BTS", "MRFILES",
"CENC", "MRSAB",
"CFR", "MRSAB",
"CHANGEKEY", "MRHIST",
"CHANGETYPE", "MRHIST",
"CHANGEVAL", "MRHIST",
"CLS", "MRFILES",
"CODE", "MRSAT",
"CODE", "MRCONSO",
"COL", "MRCOLS",
"CUI", "MRHIST",
"CUI", "AMBIGLUI",
"CUI", "AMBIGSUI",
"CUI", "CHANGE/MERGEDCUI",
"CUI", "MRCONSO",
"CUI", "MRDEF",
"CUI", "MRHIER",
"CUI", "MRSAT",
"CUI", "MRSTY",
"CUI", "MRXNS_ENG",
"CUI", "MRXNW_ENG",
"CUI", "MRXW_BAQ",
"CUI", "MRXW_CHI",
"CUI", "MRXW_CZE",
"CUI", "MRXW_DAN",
"CUI", "MRXW_DUT",
"CUI", "MRXW_ENG",
"CUI", "MRXW_EST",
"CUI", "MRXW_FIN",
"CUI", "MRXW_FRE",
"CUI", "MRXW_GER",
"CUI", "MRXW_GRE",
"CUI", "MRXW_HEB",
"CUI", "MRXW_HUN",
"CUI", "MRXW_ITA",
"CUI", "MRXW_JPN",
"CUI", "MRXW_KOR",
"CUI", "MRXW_LAV",
"CUI", "MRXW_NOR",
"CUI", "MRXW_POL",
"CUI", "MRXW_POR",
"CUI", "MRXW_RUS",
"CUI", "MRXW_SCR",
"CUI", "MRXW_SPA",
"CUI", "MRXW_SWE",
"CUI", "MRXW_TUR",
"CUI1", "MRAUI",
"CUI1", "MRCUI",
"CUI1", "MRREL",
"CUI2", "MRCUI",
"CUI2", "MRAUI",
"CUI2", "MRREL",
"CURVER", "MRSAB",
"CVF", "MRHIST",
"CVF", "MRMAP",
"CVF", "MRSMAP",
"CVF", "MRDEF",
"CVF", "MRHIER",
"CVF", "MRSAT",
"CVF", "MRREL",
"CVF", "MRCONSO",
"CVF", "MRSTY",
"CXN", "MRHIER",
"CXTY", "MRSAB",
"DEF", "MRDEF",
"DES", "MRCOLS",
"DES", "MRFILES",
"DIR", "MRREL",
"DOCKEY", "MRDOC",
"DTY", "MRCOLS",
"EXPL", "MRDOC",
"FIL", "MRCOLS",
"FIL", "MRFILES",
"FMT", "MRFILES",
"FROMEXPR", "MRSMAP",
"FROMEXPR", "MRMAP",
"FROMID", "MRMAP",
"FROMRES", "MRMAP",
"FROMRULE", "MRMAP",
"FROMSID", "MRMAP",
"FROMTYPE", "MRSMAP",
"FROMTYPE", "MRMAP",
"HCD", "MRHIER",
"IMETA", "MRSAB",
"ISPREF", "MRCONSO",
"LAT", "MRSAB",
"LAT", "CHANGE/DELETEDSUI",
"LAT", "MRCONSO",
"LAT", "MRXNS_ENG",
"LAT", "MRXNW_ENG",
"LAT", "MRXW_BAQ",
"LAT", "MRXW_CHI",
"LAT", "MRXW_CZE",
"LAT", "MRXW_DAN",
"LAT", "MRXW_DUT",
"LAT", "MRXW_ENG",
"LAT", "MRXW_EST",
"LAT", "MRXW_FIN",
"LAT", "MRXW_FRE",
"LAT", "MRXW_GER",
"LAT", "MRXW_GRE",
"LAT", "MRXW_HEB",
"LAT", "MRXW_HUN",
"LAT", "MRXW_ITA",
"LAT", "MRXW_JPN",
"LAT", "MRXW_KOR",
"LAT", "MRXW_LAV",
"LAT", "MRXW_NOR",
"LAT", "MRXW_POL",
"LAT", "MRXW_POR",
"LAT", "MRXW_RUS",
"LAT", "MRXW_SCR",
"LAT", "MRXW_SPA",
"LAT", "MRXW_SWE",
"LAT", "MRXW_TUR",
"LUI", "MRSAT",
"LUI", "MRXW_BAQ",
"LUI", "MRXW_DAN",
"LUI", "MRXW_FIN",
"LUI", "MRXW_HEB",
"LUI", "MRXW_LAV",
"LUI", "MRXW_JPN",
"LUI", "MRXW_SCR",
"LUI", "AMBIGLUI",
"LUI", "MRXW_POL",
"LUI", "MRXW_SWE",
"LUI", "MRXW_CZE",
"LUI", "MRCONSO",
"LUI", "MRXW_GER",
"LUI", "MRXW_SPA",
"LUI", "MRXW_ENG",
"LUI", "MRXNW_ENG",
"LUI", "MRXNS_ENG",
"LUI", "MRXW_DUT",
"LUI", "MRXW_POR",
"LUI", "MRXW_ITA",
"LUI", "MRXW_FRE",
"LUI", "MRXW_RUS",
"LUI", "CHANGE/MERGEDLUI",
"LUI", "MRXW_KOR",
"LUI", "MRXW_NOR",
"LUI", "MRXW_HUN",
"LUI", "MRXW_CHI",
"LUI", "MRXW_EST",
"LUI", "MRXW_GRE",
"LUI", "MRXW_TUR",
"MAPATN", "MRMAP",
"MAPATV", "MRMAP",
"MAPID", "MRSMAP",
"MAPID", "MRMAP",
"MAPIN", "MRCUI",
"MAPIN", "MRAUI",
"MAPRANK", "MRMAP",
"MAPREASON", "MRCUI",
"MAPREASON", "MRAUI",
"MAPRES", "MRMAP",
"MAPRULE", "MRMAP",
"MAPSETCUI", "MRMAP",
"MAPSETCUI", "MRSMAP",
"MAPSETSAB", "MRSMAP",
"MAPSETSAB", "MRMAP",
"MAPSID", "MRSMAP",
"MAPSID", "MRMAP",
"MAPSUBSETID", "MRMAP",
"MAPTYPE", "MRMAP",
"MAX", "MRCOLS",
"METAUI", "MRSAT",
"MIN", "MRCOLS",
"NSTR", "MRXNS_ENG",
"NWD", "MRXNW_ENG",
"PAUI", "MRHIER",
"PCUI", "CHANGE/DELETEDCUI",
"PCUI", "CHANGE/MERGEDCUI",
"PLUI", "CHANGE/DELETEDLUI",
"PLUI", "CHANGE/MERGEDLUI",
"PSTR", "CHANGE/DELETEDSUI",
"PSTR", "CHANGE/DELETEDLUI",
"PSTR", "CHANGE/DELETEDCUI",
"PSUI", "CHANGE/DELETEDSUI",
"PTR", "MRHIER",
"RANK", "MRRANK",
"RCUI", "MRSAB",
"REASON", "MRHIST",
"REF", "MRCOLS",
"REL", "MRAUI",
"REL", "MRMAP",
"REL", "MRSMAP",
"REL", "MRCUI",
"REL", "MRREL",
"RELA", "MRAUI",
"RELA", "MRCUI",
"RELA", "MRSMAP",
"RELA", "MRHIER",
"RELA", "MRREL",
"RELA", "MRMAP",
"RG", "MRREL",
"RMETA", "MRSAB",
"RSAB", "MRSAB",
"RUI", "MRREL",
"RWS", "MRFILES",
"SAB", "MRHIST",
"SAB", "MRDEF",
"SAB", "MRREL",
"SAB", "MRRANK",
"SAB", "MRCONSO",
"SAB", "MRSAT",
"SAB", "MRHIER",
"SABIN", "MRSAB",
"SATUI", "MRDEF",
"SATUI", "MRSAT",
"SAUI", "MRCONSO",
"SCC", "MRSAB",
"SCIT", "MRSAB",
"SCUI", "MRCONSO",
"SDUI", "MRCONSO",
"SF", "MRSAB",
"SL", "MRREL",
"SLC", "MRSAB",
"SON", "MRSAB",
"SOURCEUI", "MRHIST",
"SRL", "MRCONSO",
"SRL", "MRSAB",
"SRUI", "MRREL",
"SSN", "MRSAB",
"STN", "MRSTY",
"STR", "MRCONSO",
"STT", "MRCONSO",
"STY", "MRSTY",
"STYPE", "MRSAT",
"STYPE1", "MRREL",
"STYPE2", "MRREL",
"SUI", "MRSAT",
"SUI", "MRXW_BAQ",
"SUI", "MRXW_DAN",
"SUI", "MRXW_FIN",
"SUI", "MRXW_HEB",
"SUI", "AMBIGSUI",
"SUI", "MRXW_JPN",
"SUI", "MRXW_SWE",
"SUI", "MRXW_GER",
"SUI", "MRXW_SPA",
"SUI", "MRXW_DUT",
"SUI", "MRCONSO",
"SUI", "MRXNS_ENG",
"SUI", "MRXW_ENG",
"SUI", "MRXNW_ENG",
"SUI", "MRXW_POR",
"SUI", "MRXW_ITA",
"SUI", "MRXW_RUS",
"SUI", "MRXW_FRE",
"SUI", "MRXW_CZE",
"SUI", "MRXW_NOR",
"SUI", "MRXW_HUN",
"SUI", "MRXW_CHI",
"SUI", "MRXW_EST",
"SUI", "MRXW_GRE",
"SUI", "MRXW_KOR",
"SUI", "MRXW_LAV",
"SUI", "MRXW_POL",
"SUI", "MRXW_SCR",
"SUI", "MRXW_TUR",
"SUPPRESS", "MRCONSO",
"SUPPRESS", "MRDEF",
"SUPPRESS", "MRRANK",
"SUPPRESS", "MRREL",
"SUPPRESS", "MRSAT",
"SVER", "MRHIST",
"SVER", "MRSAB",
"TFR", "MRSAB",
"TOEXPR", "MRMAP",
"TOEXPR", "MRSMAP",
"TOID", "MRMAP",
"TORES", "MRMAP",
"TORULE", "MRMAP",
"TOSID", "MRMAP",
"TOTYPE", "MRMAP",
"TOTYPE", "MRSMAP",
"TS", "MRCONSO",
"TTY", "MRCONSO",
"TTY", "MRRANK",
"TTYL", "MRSAB",
"TUI", "MRSTY",
"TYPE", "MRDOC",
"VALUE", "MRDOC",
"VCUI", "MRSAB",
"VEND", "MRSAB",
"VER", "MRAUI",
"VER", "MRCUI",
"VSAB", "MRSAB",
"VSTART", "MRSAB",
"WD", "MRXW_FIN",
"WD", "MRXW_KOR",
"WD", "MRXW_CHI",
"WD", "MRXW_EST",
"WD", "MRXW_TUR",
"WD", "MRXW_POR",
"WD", "MRXW_ITA",
"WD", "MRXW_ENG",
"WD", "MRXW_HEB",
"WD", "MRXW_FRE",
"WD", "MRXW_DAN",
"WD", "MRXW_SPA",
"WD", "MRXW_GRE",
"WD", "MRXW_RUS",
"WD", "MRXW_BAQ",
"WD", "MRXW_LAV",
"WD", "MRXW_CZE",
"WD", "MRXW_HUN",
"WD", "MRXW_DUT",
"WD", "MRXW_GER",
"WD", "MRXW_SCR",
"WD", "MRXW_POL",
"WD", "MRXW_JPN",
"WD", "MRXW_NOR",
"WD", "MRXW_SWE")
}
#' @title
#' Get Vocabulary Details to Annotate SAB Fields
#'
#' @description
#' Get Maps Between the SAB where the Vocabulary is referred to by Abbreviation. Expansion is sourced from \href{https://www.nlm.nih.gov/research/umls/sourcereleasedocs/index.html}{https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/columns_data_elements.html}
#'
#' @seealso
#' \code{\link[tibble]{tribble}}
#' @export
#' @importFrom tibble tribble
doc_sab_annotation <-
function() {
tibble::tribble(
~`Vocabulary`,~`Abbreviation`,~`Last Updated`,~`Language`,~`Restriction Level`,
"AI/RHEUM", "AIR", "1995AA", "ENG", "0",
"Alternative Billing Concepts", "ALT", "2009AA", "ENG", "3",
"Alcohol and Other Drug Thesaurus", "AOD", "2002AC", "ENG", "0",
"Authorized Osteopathic Thesaurus", "AOT", "2006AD", "ENG", "0",
"Anatomical Therapeutic Chemical Classification System", "ATC", "2020AA", "ENG", "0",
"Beth Israel Problem List", "BI", "1999AA", "ENG", "2",
"Clinical Care Classification", "CCC", "2018AA", "ENG", "1",
"Clinical Problem Statements", "CCPSS", "2000AA", "ENG", "3",
"Clinical Classifications Software Refined for ICD-10-CM", "CCSR_10", "2020AA", "ENG", "0",
"Clinical Classifications Software for ICD-10-PCS", "CCS_10", "2020AA", "ENG", "0",
"Clinical Classifications Software", "CCS", "2005AC", "ENG", "0",
"CDT", "CDT", "2019AB", "ENG", "3",
"Consumer Health Vocabulary", "CHV", "2012AA", "ENG", "0",
"COSTAR", "COSTAR", "2002AD", "ENG", "0",
"Medical Entities Dictionary", "CPM", "2003AC", "ENG", "2",
"CPT Spanish", "CPTSP", "2001AC", "SPA", "3",
"CPT - Current Procedural Terminology", "CPT", "2020AA", "ENG", "3",
"CRISP Thesaurus", "CSP", "2006AB", "ENG", "0",
"COSTART", "CST", "1999AA", "ENG", "0",
"Vaccines Administered", "CVX", "2020AA", "ENG", "0",
"Diseases Database", "DDB", "2001AA", "ENG", "3",
"ICD-10 German", "DMDICD10", "1997AA", "GER", "1",
"UMDNS German", "DMDUMD", "1999AA", "GER", "1",
"DrugBank", "DRUGBANK", "2020AA", "ENG", "0",
"Diagnostic and Statistical Manual of Mental Disorders, Fifth Edition", "DSM-5", "2016AB", "ENG", "3",
"DXplain", "DXP", "1995AA", "ENG", "0",
"Foundational Model of Anatomy", "FMA", "2019AB", "ENG", "0",
"Gene Ontology", "GO", "2019AB", "ENG", "0",
"Gold Standard Drug Database", "GS", "2020AA", "ENG", "3",
"CDT in HCPCS", "HCDT", "2020AA", "ENG", "3",
"HCPCS - Healthcare Common Procedure Coding System", "HCPCS", "2020AA", "ENG", "0",
"CPT in HCPCS", "HCPT", "2020AA", "ENG", "3",
"HUGO Gene Nomenclature Committee", "HGNC", "2019AB", "ENG", "0",
"HL7 Version 2.5", "HL7V2.5", "2005AC", "ENG", "0",
"HL7 Version 3.0", "HL7V3.0", "2020AA", "ENG", "0",
"ICPC2E ICD10 Relationships", "HLREL", "2001AA", "", "3",
"Human Phenotype Ontology", "HPO", "2020AA", "ENG", "0",
"ICD-10, American English Equivalents", "ICD10AE", "1998AA", "ENG", "3",
"ICD-10, Australian Modification, Americanized English Equivalents", "ICD10AMAE", "2002AD", "ENG", "3",
"ICD-10, Australian Modification", "ICD10AM", "2000AB", "ENG", "3",
"International Classification of Diseases, Tenth Revision, Clinical Modification", "ICD10CM", "2019AB", "ENG", "4",
"ICD10, Dutch Translation", "ICD10DUT", "2004AB", "DUT", "3",
"ICD-10 Procedure Coding System", "ICD10PCS", "2019AB", "ENG", "0",
"International Classification of Diseases and Related Health Problems, Tenth Revision", "ICD10", "2004AB", "ENG", "3",
"International Classification of Diseases, Ninth Revision, Clinical Modification", "ICD9CM", "2015AA", "ENG", "0",
"International Classification of Functioning, Disability and Health for Children and Youth", "ICF-CY", "2009AA", "ENG", "4",
"International Classification of Functioning, Disability and Health", "ICF", "2009AA", "ENG", "4",
"International Classification for Nursing Practice", "ICNP", "2019AB", "ENG", "3",
"ICPC2E Dutch", "ICPC2EDUT", "2004AB", "DUT", "3",
"International Classification of Primary Care, 2nd Edition, Electronic", "ICPC2EENG", "2004AB", "ENG", "3",
"ICPC2-ICD10 Thesaurus, Dutch Translation", "ICPC2ICD10DUT", "2005AB", "DUT", "3",
"ICPC2-ICD10 Thesaurus", "ICPC2ICD10ENG", "2005AB", "ENG", "3",
"ICPC-2 PLUS", "ICPC2P", "2006AB", "ENG", "3",
"ICPC Basque", "ICPCBAQ", "2000AA", "BAQ", "0",
"ICPC Danish", "ICPCDAN", "1999AA", "DAN", "0",
"ICPC Dutch", "ICPCDUT", "1999AA", "DUT", "0",
"ICPC Finnish", "ICPCFIN", "1999AA", "FIN", "0",
"ICPC French", "ICPCFRE", "2000AA", "FRE", "0",
"ICPC German", "ICPCGER", "2000AA", "GER", "0",
"ICPC Hebrew", "ICPCHEB", "2000AA", "HEB", "0",
"ICPC Hungarian", "ICPCHUN", "1999AA", "HUN", "0",
"ICPC Italian", "ICPCITA", "1999AA", "ITA", "0",
"ICPC Norwegian", "ICPCNOR", "1999AA", "NOR", "0",
"ICPC Portuguese", "ICPCPOR", "1999AA", "POR", "0",
"ICPC Spanish", "ICPCSPA", "2000AA", "SPA", "0",
"ICPC Swedish", "ICPCSWE", "2000AA", "SWE", "0",
"International Classification of Primary Care", "ICPC", "1998AA", "ENG", "0",
"Congenital Mental Retardation Syndromes", "JABL", "2000AA", "ENG", "1",
"Korean Standard Classification of Disease Version 5", "KCD5", "2009AA", "KOR", "3",
"Library of Congress Subject Headings, Northwestern University subset", "LCH_NW", "2014AB", "ENG", "0",
"Library of Congress Subject Headings", "LCH", "1992AA", "ENG", "0",
"LOINC Linguistic Variant - German, Austria", "LNC-DE-AT", "2020AA", "GER", "0",
"LOINC Linguistic Variant - German, Switzerland", "LNC-DE-CH", "2020AA", "GER", "0",
"LOINC Linguistic Variant - German, Germany", "LNC-DE-DE", "2020AA", "GER", "0",
"LOINC Linguistic Variant - Greek, Greece", "LNC-EL-GR", "2020AA", "GRE", "0",
"LOINC Linguistic Variant - Spanish, Argentina", "LNC-ES-AR", "2020AA", "SPA", "0",
"LOINC Linguistic Variant - Spanish, Switzerland", "LNC-ES-CH", "2020AA", "SPA", "0",
"LOINC Linguistic Variant - Spanish, Spain", "LNC-ES-ES", "2020AA", "SPA", "0",
"LOINC Linguistic Variant - Estonian, Estonia", "LNC-ET-EE", "2020AA", "EST", "0",
"LOINC Linguistic Variant - French, Belgium", "LNC-FR-BE", "2020AA", "FRE", "0",
"LOINC Linguistic Variant - French, Canada", "LNC-FR-CA", "2020AA", "FRE", "0",
"LOINC Linguistic Variant - French, Switzerland", "LNC-FR-CH", "2020AA", "FRE", "0",
"LOINC Linguistic Variant - French, France", "LNC-FR-FR", "2020AA", "FRE", "0",
"LOINC Linguistic Variant - Italian, Switzerland", "LNC-IT-CH", "2020AA", "ITA", "0",
"LOINC Linguistic Variant - Italian, Italy", "LNC-IT-IT", "2020AA", "ITA", "0",
"LOINC Linguistic Variant - Korea, Korean", "LNC-KO-KR", "2020AA", "KOR", "0",
"LOINC Linguistic Variant - Dutch, Netherlands", "LNC-NL-NL", "2020AA", "DUT", "0",
"LOINC Linguistic Variant - Portuguese, Brazil", "LNC-PT-BR", "2020AA", "POR", "0",
"LOINC Linguistic Variant - Russian, Russia", "LNC-RU-RU", "2020AA", "RUS", "0",
"LOINC Linguistic Variant - Turkish, Turkey", "LNC-TR-TR", "2020AA", "TUR", "0",
"LOINC Linguistic Variant - Chinese, China", "LNC-ZH-CN", "2020AA", "CHI", "0",
"LOINC Prerelease Terms, Special Use", "LNC_SPECIAL_USE", "2020AA", "ENG", "0",
"LOINC", "LNC", "2020AA", "ENG", "0",
"Glossary of Clinical Epidemiologic Terms", "MCM", "1992AA", "ENG", "0",
"MedDRA Czech", "MDRCZE", "2020AA", "CZE", "3",
"MedDRA Dutch", "MDRDUT", "2020AA", "DUT", "3",
"MedDRA French", "MDRFRE", "2020AA", "FRE", "3",
"MedDRA German", "MDRGER", "2020AA", "GER", "3",
"MedDRA Hungarian", "MDRHUN", "2020AA", "HUN", "3",
"MedDRA Italian", "MDRITA", "2020AA", "ITA", "3",
"MedDRA Japanese", "MDRJPN", "2020AA", "JPN", "3",
"MedDRA Korean", "MDRKOR", "2020AA", "KOR", "3",
"MedDRA Portuguese", "MDRPOR", "2020AA", "POR", "3",
"MedDRA Russian", "MDRRUS", "2020AA", "RUS", "3",
"MedDRA Spanish", "MDRSPA", "2020AA", "SPA", "3",
"MedDRA", "MDR", "2020AA", "ENG", "3",
"Medication Reference Terminology", "MED-RT", "2020AA", "ENG", "0",
"MEDCIN", "MEDCIN", "2020AA", "ENG", "3",
"MedlinePlus Health Topics", "MEDLINEPLUS", "2020AA", "ENG", "0",
"Multum", "MMSL", "2020AA", "ENG", "1",
"Micromedex", "MMX", "2020AA", "ENG", "3",
"MeSH Czech", "MSHCZE", "2020AA", "CZE", "3",
"MeSH Dutch", "MSHDUT", "2005AB", "DUT", "3",
"MeSH Finnish", "MSHFIN", "2008AA", "FIN", "3",
"MeSH French", "MSHFRE", "2020AA", "FRE", "3",
"MeSH German", "MSHGER", "2019AA", "GER", "3",
"MeSH Italian", "MSHITA", "2019AA", "ITA", "3",
"MeSH Japanese", "MSHJPN", "2015AB", "JPN", "3",
"MeSH Latvian", "MSHLAV", "2012AA", "LAV", "3",
"MeSH Norwegian", "MSHNOR", "2019AA", "NOR", "3",
"MeSH Polish", "MSHPOL", "2020AA", "POL", "3",
"MeSH Portuguese", "MSHPOR", "2020AA", "POR", "3",
"MeSH Russian", "MSHRUS", "2020AA", "RUS", "3",
"MeSH Croatian", "MSHSCR", "2019AA", "SCR", "3",
"MeSH Spanish", "MSHSPA", "2020AA", "SPA", "3",
"MeSH Swedish", "MSHSWE", "2020AA", "SWE", "3",
"MeSH", "MSH", "2020AA", "ENG", "0",
"Metathesaurus CMS Formulary Reference File", "MTHCMSFRF", "2020AA", "ENG", "0",
"ICD-9-CM Entry Terms", "MTHICD9", "2015AA", "ENG", "0",
"ICPC2E American English Equivalents", "MTHICPC2EAE", "2004AB", "ENG", "3",
"ICPC2E-ICD10 Thesaurus, American English Equivalents", "MTHICPC2ICD10AE", "2005AB", "ENG", "3",
"Minimal Standard Terminology French (UMLS)", "MTHMSTFRE", "2002AA", "FRE", "0",
"Minimal Standard Terminology Italian (UMLS)", "MTHMSTITA", "2002AA", "ITA", "0",
"Minimal Standard Terminology (UMLS)", "MTHMST", "2002AA", "ENG", "0",
"FDA Structured Product Labels", "MTHSPL", "2020AA", "ENG", "0",
"Metathesaurus Names", "MTH", "1990AA", "ENG", "0",
"Manufacturers of Vaccines", "MVX", "2020AA", "ENG", "0",
"NANDA-I Taxonomy", "NANDA-I", "2018AA", "ENG", "3",
"NCBI Taxonomy", "NCBI", "2019AB", "ENG", "0",
"NCI SEER ICD Mappings", "NCISEER", "2002AD", "", "0",
"Biomedical Research Integrated Domain Group Model, 3.0.3", "NCI_BRIDG_3_0_3", "2020AA", "ENG", "0",
"Biomedical Research Integrated Domain Group Model Subset", "NCI_BRIDG", "2020AA", "ENG", "0",
"BioCarta online maps of molecular pathways, adapted for NCI use", "NCI_BioC", "2020AA", "ENG", "0",
"Chemical Biology and Drug Development Vocabulary", "NCI_CBDD", "2020AA", "ENG", "0",
"U.S. Centers for Disease Control and Prevention Terms", "NCI_CDC", "2020AA", "ENG", "0",
"CDISC Glossary Terminology", "NCI_CDISC-GLOSS", "2020AA", "ENG", "0",
"CDISC Terminology", "NCI_CDISC", "2020AA", "ENG", "0",
"Clinical Proteomic Tumor Analysis Consortium", "NCI_CPTAC", "2019AB", "ENG", "0",
"Cancer Research Center of Hawaii Nutrition Terminology", "NCI_CRCH", "2020AA", "ENG", "0",
"Common Terminology Criteria for Adverse Events 3.0", "NCI_CTCAE_3", "2020AA", "ENG", "0",
"Common Terminology Criteria for Adverse Events 5.0", "NCI_CTCAE_5", "2020AA", "ENG", "0",
"Common Terminology Criteria for Adverse Events 4.3 Subset", "NCI_CTCAE", "2020AA", "ENG", "0",
"Cancer Therapy Evaluation Program - Simple Disease Classification", "NCI_CTEP-SDC", "2020AA", "ENG", "0",
"Clinical Trials Reporting Program Terms", "NCI_CTRP", "2020AA", "ENG", "0",
"Content Archive Resource Exchange Lexicon", "NCI_CareLex", "2020AA", "ENG", "0",
"NCI Division of Cancer Prevention Program Terms", "NCI_DCP", "2020AA", "ENG", "0",
"Digital Imaging Communications in Medicine Terms", "NCI_DICOM", "2020AA", "ENG", "0",
"NCI Developmental Therapeutics Program", "NCI_DTP", "2020AA", "ENG", "0",
"European Directorate for the Quality of Medicines & Healthcare Terms", "NCI_EDQM-HC", "2020AA", "ENG", "0",
"FDA Terminology", "NCI_FDA", "2020AA", "ENG", "0",
"Global Alignment of Immunization Safety Assessment in Pregnancy Terms", "NCI_GAIA", "2020AA", "ENG", "0",
"Geopolitical Entities, Names, and Codes (GENC) Standard Edition 1", "NCI_GENC", "2020AA", "ENG", "0",
"International Conference on Harmonization Terms", "NCI_ICH", "2020AA", "ENG", "0",
"International Neonatal Consortium", "NCI_INC", "2020AA", "ENG", "0",
"Jackson Laboratories Mouse Terminology, adapted for NCI use", "NCI_JAX", "2020AA", "ENG", "0",
"KEGG Pathway Database Terms", "NCI_KEGG", "2020AA", "ENG", "0",
"NCI Dictionary of Cancer Terms", "NCI_NCI-GLOSS", "2020AA", "ENG", "0",
"NCI HUGO Gene Nomenclature", "NCI_NCI-HGNC", "2020AA", "ENG", "0",
"NCI Health Level 7", "NCI_NCI-HL7", "2020AA", "ENG", "0",
"NCPDP Terminology", "NCI_NCPDP", "2020AA", "ENG", "0",
"NICHD Terminology", "NCI_NICHD", "2020AA", "ENG", "0",
"Prostate Imaging Reporting and Data System Terms", "NCI_PI-RADS", "2020AA", "ENG", "0",
"National Cancer Institute Nature Pathway Interaction Database Terms", "NCI_PID", "2020AA", "ENG", "0",
"Registry Nomenclature Information System", "NCI_RENI", "2020AA", "ENG", "0",
"Unified Code for Units of Measure", "NCI_UCUM", "2020AA", "ENG", "0",
"Zebrafish Model Organism Database Terms", "NCI_ZFin", "2020AA", "ENG", "0",
"NCI Thesaurus", "NCI", "2020AA", "ENG", "0",
"FDB MedKnowledge", "NDDF", "2020AA", "ENG", "3",
"Neuronames Brain Hierarchy", "NEU", "2019AB", "ENG", "3",
"Nursing Interventions Classification", "NIC", "2018AB", "ENG", "3",
"Nursing Outcomes Classification", "NOC", "2018AB", "ENG", "3",
"National Uniform Claim Committee - Health Care Provider Taxonomy", "NUCCPT", "2020AA", "ENG", "3",
"Online Mendelian Inheritance in Man", "OMIM", "2020AA", "ENG", "0",
"Omaha System", "OMS", "2007AC", "ENG", "1",
"Patient Care Data Set", "PCDS", "1999AA", "ENG", "3",
"Physician Data Query", "PDQ", "2019AA", "ENG", "0",
"Perioperative Nursing Data Set", "PNDS", "2018AB", "ENG", "3",
"Pharmacy Practice Activity Classification", "PPAC", "1999AA", "ENG", "3",
"Psychological Index Terms", "PSY", "2005AB", "ENG", "3",
"Quick Medical Reference", "QMR", "1998AA", "ENG", "0",
"Clinical Concepts by R A Miller", "RAM", "2000AA", "ENG", "0",
"Read Codes Am Engl", "RCDAE", "2000AA", "ENG", "3",
"Read Codes Am Synth", "RCDSA", "2000AA", "ENG", "3",
"Read Codes Synth", "RCDSY", "2000AA", "ENG", "3",
"Read Codes", "RCD", "2000AA", "ENG", "3",
"RXNORM", "RXNORM", "2020AA", "ENG", "0",
"SNOMED CT Spanish Edition", "SCTSPA", "2020AA", "SPA", "9",
"SNOMED Intl 1998", "SNMI", "1999AA", "ENG", "9",
"SNOMED 1982", "SNM", "1991AA", "ENG", "9",
"SNOMED CT, US Edition", "SNOMEDCT_US", "2020AA", "ENG", "9",
"SNOMED CT, Veterinary Extension", "SNOMEDCT_VET", "2020AA", "ENG", "9",
"Source of Payment Typology", "SOP", "2020AA", "ENG", "0",
"Standard Product Nomenclature", "SPN", "2004AA", "ENG", "0",
"Source Terminology Names (UMLS)", "SRC", "1995AA", "ENG", "0",
"Traditional Korean Medical Terms", "TKMT", "2011AB", "KOR", "0",
"UltraSTAR", "ULT", "1995AA", "ENG", "3",
"UMDNS", "UMD", "2020AA", "ENG", "1",
"USP Model Guidelines", "USPMG", "2020AA", "ENG", "0",
"USP Compendial Nomenclature", "USP", "2020AA", "ENG", "0",
"Digital Anatomist", "UWDA", "2003AC", "ENG", "0",
"National Drug File", "VANDF", "2020AA", "ENG", "0",
"WHOART French", "WHOFRE", "1999AA", "FRE", "2",
"WHOART German", "WHOGER", "1999AA", "GER", "2",
"WHOART Portuguese", "WHOPOR", "1999AA", "POR", "2",
"WHOART Spanish", "WHOSPA", "1999AA", "SPA", "2",
"WHOART", "WHO", "1999AA", "ENG", "2"
)
}
#' @title
#' Annotate Field Values with Details
#'
#' @description
#' Get Maps Between Field-Value Pairs where the Value is abbreviated as show at \href{https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/abbreviations.html}{https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/columns_data_elements.html}.
#' @seealso
#' \code{\link[tibble]{tribble}}
#' @export
#' @importFrom tibble tribble
doc_field_value_annotation <-
function() {
list(
CXTY = tibble::tribble(
~CXTY,~`CXTY Description`,
"FULL-MULTIPLE", "Full contexts, multiple tree positions",
"FULL-NOSIB-IGNORE-RELA", "Full contexts, no siblings, RELA not used when computing ancestors/descendants",
"FULL-NOSIB-MULTIPLE-IGNORE-RELA", "Full contexts, no siblings, multiple tree positions, RELA not used when computing ancestors/descendants",
"FULL-NOSIB-MULTIPLE", "Full contexts, no siblings, multiple tree positions",
"FULL-NOSIB", "Full contexts, no siblings",
"FULL", "Full contexts"
),
FROMTYPE = tibble::tribble(
~`FROMTYPE
(Type of Expression from Which a
Mapping is Mapped)`,~`FROMTYPE Description`,
"CODE", "Unique Identifier or code for string in source",
"CUI", "Concept unique identifier",
"SCUI", "Source asserted concept unique identifier",
"SDUI", "Source asserted descriptor identifier"
),
LAT = tibble::tribble(
~`LAT (Language of Terms)`,~`LAT Description`,
"BAQ", "Basque",
"CHI", "Chinese",
"CZE", "Czech",
"DAN", "Danish",
"DUT", "Dutch",
"ENG", "English",
"EST", "Estonian",
"FIN", "Finnish",
"FRE", "French",
"GER", "German",
"GRE", "Greek",
"HEB", "Hebrew",
"HUN", "Hungarian",
"ITA", "Italian",
"JPN", "Japanese",
"KOR", "Korean",
"LAV", "Latvian",
"NOR", "Norwegian",
"POL", "Polish",
"POR", "Portuguese",
"RUS", "Russian",
"SCR", "Croatian",
"SPA", "Spanish",
"SWE", "Swedish",
"TUR", "Turkish"
),
MAPATN = tibble::tribble(
~MAPATN,~`MAPATN Description`,
"ACTIVE", "Active",
"", "Empty attribute name"
),
REL = tibble::tribble(
~`REL (Relationship)`,~`REL Description`,
"AQ", "Allowed qualifier",
"CHD", "has child relationship in a Metathesaurus source vocabulary",
"DEL", "Deleted concept",
"PAR", "has parent relationship in a Metathesaurus source vocabulary",
"QB", "can be qualified by.",
"RB", "has a broader relationship",
"RL", "the relationship is similar or alike. the two concepts are similar or alike. In the current edition of the Metathesaurus, most relationships with this attribute are mappings provided by a source, named in SAB and SL; hence concepts linked by this relationship may be synonymous, i.e. self-referential: CUI1 = CUI2. In previous releases, some MeSH Supplementary Concept relationships were represented in this way.",
"RN", "has a narrower relationship",
"RO", "has relationship other than synonymous, narrower, or broader",
"RQ", "related and possibly synonymous.",
"RU", "Related, unspecified",
"SIB", "has sibling relationship in a Metathesaurus source vocabulary.",
"SY", "source asserted synonymy.",
"XR", "Not related, no mapping",
"", "Empty relationship"
),
RELA = tibble::tribble(
~`RELA (Relationship Attribute)`,~`RELA Description`,
"abnormal_cell_affected_by_chemical_or_drug", "abnormal cell affected by chemical or drug",
"abnormality_associated_with_allele", "abnormality associated with allele",
"access_device_used_by", "Access device used by",
"access_instrument_of", "Access instrument of",
"access_of", "Access of",
"active_ingredient_of", "Active ingredient of",
"active_metabolites_of", "Active metabolites of",
"active_moiety_of", "Active Moiety of",
"activity_of_allele", "activity of allele",
"actual_outcome_of", "Actual outcome of",
"add_on_code_for", "Add on code for (Report with)",
"adheres_to", "Adheres to",
"adjacent_to", "Adjacent to",
"adjectival_form_of", "Adjectival form of",
"adjustment_of", "Adjustment of",
"afferent_to", "Afferent to",
"alias_of", "Alias_of",
"allele_absent_from_wild-type_chromosomal_location", "allele absent from wild-type chromosomal location",
"allele_has_abnormality", "allele has abnormality",
"allele_has_activity", "allele has activity",
"allele_in_chromosomal_location", "allele in chromosomal location",
"allele_plays_altered_role_in_process", "allele plays altered role in process",
"allele_plays_role_in_metabolism_of_chemical_or_drug", "allele plays role in metabolism of chemical or drug",
"allelic_variant_of", "Allelic Variant of",
"alternative_of", "Alternative of",
"analyzed_by", "Analyzed by",
"analyzes", "Analyzes",
"anatomic_structure_has_location", "anatomic structure has location",
"anatomic_structure_is_physical_part_of", "anatomic structure is physical part of",
"anatomical_entity_observed_in", "anatomical entity observed in",
"anatomy_originated_from_biological_process", "anatomy originated from biological process",
"answer_to", "answer to",
"anterior_to", "anterior to",
"anteroinferior_to", "anteroinferior to",
"anterolateral_to", "anterolateral to",
"anteromedial_to", "anteromedial to",
"anterosuperior_to", "anterosuperior to",
"approach_of_excluded", "Approach of excluded",
"approach_of_possibly_included", "Approach of possibly included",
"approach_of", "Approach of",
"archetype_of", "Archetype of",
"arterial_supply_of", "Arterial supply of",
"articulates_with", "Articulates with",
"associated_condition_of", "Associated condition of",
"associated_disease", "Associated disease",
"associated_etiologic_finding_of", "Associated etiologic finding of",
"associated_finding_of_excluded", "Associated finding of excluded",
"associated_finding_of_possibly_included", "Associated finding of possibly included",
"associated_finding_of", "Associated finding of",
"associated_function_of", "Associated function of",
"associated_genetic_condition", "Associated genetic condition",
"associated_morphology_of", "Associated morphology of",
"associated_procedure_of_excluded", "Associated procedure of excluded",
"associated_procedure_of_possibly_included", "Associated procedure of possibly included",
"associated_procedure_of", "Associated procedure of",
"associated_with_malfunction_of_gene_product", "associated with malfunction of gene product",
"associated_with", "Associated with",
"attaches_to", "Attaches to",
"basic_dose_form_of", "Basic dose form of",
"basis_of_strength_substance_of", "Basis of strength substance of",
"biological_process_has_associated_location", "biological process has associated location",
"biological_process_has_initiator_chemical_or_drug", "biological process has initiator chemical or drug",
"biological_process_has_initiator_process", "biological process has initiator process",
"biological_process_has_result_anatomy", "biological process has result anatomy",
"biological_process_has_result_biological_process", "biological process has result biological process",
"biological_process_has_result_chemical_or_drug", "biological process has result chemical or drug",
"biological_process_involves_chemical_or_drug", "biological process involves chemical or drug",
"biological_process_involves_gene_product", "biological process involves gene product",
"biological_process_is_part_of_process", "biological process is part of process",
"biological_process_results_from_biological_process", "biological process results from biological process",
"biomarker_type_includes_gene_product", "biomarker type includes gene product",
"biomarker_type_includes_gene", "biomarker type includes gene",
"bounded_by", "Bounded by",
"bounds", "Bounds",
"branch_of", "Branch of",
"british_form_of", "British form of",
"causative_agent_of", "Causative agent of",
"cause_of", "Cause of",
"cdrh_parent_of", "cdrh parent of",
"cell_type_is_associated_with_eo_disease", "cell type is associated with eo disease",
"cell_type_or_tissue_affected_by_chemical_or_drug", "cell type or tissue affected by chemical or drug",
"challenge_of", "Challenge of",
"characterized_by", "Characterized by",
"characterizes", "Characterizes",
"chemical_or_drug_affects_abnormal_cell", "chemical or drug affects abnormal cell",
"chemical_or_drug_affects_cell_type_or_tissue", "chemical or drug affects cell type or tissue",
"chemical_or_drug_affects_gene_product", "chemical or drug affects gene product",
"chemical_or_drug_has_mechanism_of_action", "chemical or drug has mechanism of action",
"chemical_or_drug_has_physiologic_effect", "chemical or drug has physiologic effect",
"chemical_or_drug_initiates_biological_process", "chemical or drug initiates biological process",
"chemical_or_drug_is_metabolized_by_enzyme", "chemical or drug is metabolized by enzyme",
"chemical_or_drug_is_product_of_biological_process", "chemical or drug is product of biological process",
"chemical_or_drug_metabolism_is_associated_with_allele", "chemical or drug metabolism is associated with allele",
"chemical_or_drug_plays_role_in_biological_process", "chemical or drug plays role in biological process",
"chemotherapy_regimen_has_component", "chemotherapy regimen has component",
"chromosomal_location_of_allele", "chromosomal location of allele",
"chromosomal_location_of_wild-type_gene", "chromosomal location of wild-type gene",
"chromosome_involved_in_cytogenetic_abnormality", "chromosome involved in cytogenetic abnormality",
"chromosome_mapped_to_disease", "chromosome mapped to disease",
"class_code_classified_by", "Class code classified by",
"class_of", "Class of",
"classified_as", "Classified as",
"classifies_class_code", "Classifies class code",
"classifies", "Classifies",
"clinical_course_of", "Clinical course of",
"clinically_associated_with", "Clinically associated with",
"clinically_similar", "Clinically similar",
"clinician_form_of", "Clinician form of",
"co-occurs_with", "Co-ocurrs with",
"common_name_of", "common name of",
"completely_excised_anatomy_has_procedure", "completely excised anatomy has procedure",
"completely_excised_anatomy_may_have_procedure", "Completely excised anatomy may have procedure",
"complex_has_physical_part", "complex has physical part",
"component_of_excluded", "Component of excluded",
"component_of_possibly_included", "Component of possibly included",
"component_of", "Component of",
"concentration_strength_denominator_unit_of", "Concentration strength denominator unit of",
"concentration_strength_denominator_value_of", "Concentration strength denominator value of",
"concentration_strength_numerator_unit_of", "Concentration strength numerator unit of",
"concentration_strength_numerator_value_of", "Concentration strength numerator value of",
"concept_in_subset", "concept in subset",
"conceptual_part_of", "Conceptual part of",
"connected_to", "connected to",
"connection_type_of", "connection type of",
"consider_from", "Consider from",
"consider", "Consider",
"consists_of", "Consists of",
"constitutes", "Constitutes",
"constitutional_part_of", "Constitutional part of",
"consumer_friendly_form_of", "Consumer friendly form of",
"contained_in", "Contained in",
"contains", "Contains",
"context_binding_of", "Context binding of",
"continuation_branch_of", "Continuation branch of",
"continuous_distally_with", "continuous distally with",
"continuous_proximally_with", "continuous proximally with",
"continuous_with", "Continuous with",
"contraindicated_class_of", "Contraindicated class of",
"contraindicated_mechanism_of_action_of", "Contraindicated mechanism of action of",
"contraindicated_physiologic_effect_of", "Contraindicated physiologic effect of",
"contraindicated_with_disease", "Contraindicated with disease",
"corresponds_to", "corresponds to",
"count_of_base_of_active_ingredient_of", "Count of base of active ingredient of",
"count_of", "count_of",
"course_of", "Course of",
"ctcae_5_parent_of", "ctcae_5 parent of",
"cytogenetic_abnormality_involves_chromosome", "cytogenetic abnormality involves chromosome",
"data_element_of", "data element of",
"ddx", "dxx",
"default_mapped_from", "Default mapped from",
"default_mapped_to", "Default mapped to",
"defining_characteristic_of", "Defining characteristic of",
"definitional_manifestation_of", "Definitional manifestation of",
"degree_of", "Degree of",
"dependent_of", "Dependent of",
"derives_from", "derives from",
"derives", "derives",
"development_type_of", "development type of",
"developmental_stage_of", "developmental stage of",
"develops_from", "Develops from",
"develops_into", "develops into",
"device_used_by", "Device used by",
"diagnosed_by", "Diagnosed by",
"diagnoses", "Diagnoses",
"diagnostic_criteria_of", "DSM-5 diagnostic criteria for ICD code",
"direct_cell_shape_of", "direct cell shape of",
"direct_device_of", "Direct device of",
"direct_left_of", "direct left of",
"direct_morphology_of", "Direct morphology of",
"direct_procedure_site_of", "Direct procedure site of",
"direct_right_of", "direct right of",
"direct_site_of", "Direct site of",
"direct_substance_of", "Direct substance of",
"disease_excludes_abnormal_cell", "disease excludes abnormal cell",
"disease_excludes_cytogenetic_abnormality", "disease excludes cytogenetic abnormality",
"disease_excludes_finding", "disease excludes finding",
"disease_excludes_metastatic_anatomic_site", "disease excludes metastatic anatomic site",
"disease_excludes_molecular_abnormality", "disease excludes molecular abnormality",
"disease_excludes_normal_cell_origin", "disease excludes normal cell origin",
"disease_excludes_normal_tissue_origin", "disease excludes normal tissue origin",
"disease_excludes_primary_anatomic_site", "disease excludes primary anatomic site",
"disease_has_abnormal_cell", "disease has abnormal cell",
"disease_has_accepted_treatment_with_regimen", "Disease Has Accepted Treatment With Regimen",
"disease_has_associated_anatomic_site", "disease has associated anatomic site",
"disease_has_associated_disease", "disease has associated disease",
"disease_has_associated_gene", "disease has associated gene",
"disease_has_cytogenetic_abnormality", "disease has cytogenetic abnormality",
"disease_has_finding", "disease has finding",
"disease_has_metastatic_anatomic_site", "disease has metastatic anatomic site",
"disease_has_molecular_abnormality", "disease has molecular abnormality",
"disease_has_normal_cell_origin", "disease has normal cell origin",
"disease_has_normal_tissue_origin", "disease has normal tissue origin",
"disease_has_primary_anatomic_site", "disease has primary anatomic site",
"disease_is_grade", "disease is grade",
"disease_is_marked_by_gene", "disease is marked by gene",
"disease_is_stage", "disease is stage",
"disease_mapped_to_chromosome", "disease mapped to chromosome",
"disease_mapped_to_gene", "Disease mapped to gene",
"disease_may_have_abnormal_cell", "disease may have abnormal cell",
"disease_may_have_associated_disease", "disease may have associated disease",
"disease_may_have_cytogenetic_abnormality", "disease may have cytogenetic abnormality",
"disease_may_have_finding", "disease may have finding",
"disease_may_have_molecular_abnormality", "disease may have molecular abnormality",
"disease_may_have_normal_cell_origin", "disease may have normal cell origin",
"disposition_of", "Disposition of",
"distal_to", "distal to",
"divisor_of", "Divisor of",
"do_not_code_with", "Do not code with (excludes)",
"dose_form_administration_method_of", "Dose form administration method of",
"dose_form_intended_site_of", "Dose form intended site of",
"dose_form_of", "Dose form of",
"dose_form_release_characteristic_of", "Dose form release characteristic of",
"dose_form_transformation_of", "Dose form transformation of",
"doseformgroup_of", "Dose form group of",
"drains_into", "drains into",
"due_to", "Due to",
"during_and_or_after", "During AND/OR after",
"during", "During",
"effect_may_be_inhibited_by", "Effect may be inhibited by",
"efferent_to", "Efferent to",
"endogenous_product_related_to", "Endogenous Product Related To",
"ends_during", "Ends during",
"energy_used_by", "Energy used by",
"entire_anatomy_structure_of", "Entire anatomy structure of",
"entry_combination_of", "Entry Combination of",
"entry_version_of", "Entry version of",
"enzyme_metabolizes_chemical_or_drug", "enzyme metabolizes chemical or drug",
"eo_anatomy_is_associated_with_eo_disease", "eo anatomy is associated with eo disease",
"eo_disease_has_associated_cell_type", "eo disease has associated cell type",
"eo_disease_has_associated_eo_anatomy", "eo disease has associated eo anatomy",
"eo_disease_has_property_or_attribute", "eo disease has property or attribute",
"eo_disease_maps_to_human_disease", "eo disease maps to human disease",
"episodicity_of", "Episodicity of",
"evaluation_of", "Evaluation of",
"excised_anatomy_has_procedure", "excised anatomy has procedure",
"excised_anatomy_may_have_procedure", "excised anatomy may have procedure",
"exhibited_by", "Exhibited by",
"exhibits", "Exhibits",
"expanded_form_of", "Expanded form of",
"expected_outcome_of", "Expected outcome of",
"extent_of", "Extent of",
"external_to", "external to",
"finding_context_of", "Finding context of",
"finding_informer_of", "Finding informer of",
"finding_method_of", "Finding method of",
"finding_site_of", "Finding site of",
"focus_of", "Focus of",
"form_of", "Form of",
"formed_by", "formed by",
"forms", "forms",
"fragments_for_synonyms_of", "Fragments for synonyms of",
"full_grown_phenotype_of", "full grown phenotype of",
"fuses_with", "fuses with",
"fusion_of", "fusion of",
"gene_associated_with_disease", "gene associated with disease",
"gene_encodes_gene_product", "gene encodes gene product",
"gene_found_in_organism", "gene found in organism",
"gene_has_abnormality", "gene has abnormality",
"gene_has_physical_location", "gene has physical location",
"gene_in_chromosomal_location", "gene in chromosomal location",
"gene_involved_in_molecular_abnormality", "gene involved in molecular abnormality",
"gene_involved_in_pathogenesis_of_disease", "gene involved in pathogenesis of disease",
"gene_is_biomarker_of", "gene is biomarker of",
"gene_is_biomarker_type", "gene is biomarker type",
"gene_is_element_in_pathway", "gene is element in pathway",
"gene_mapped_to_disease", "gene mapped to disease",
"gene_mutant_encodes_gene_product_sequence_variation", "gene mutant encodes gene product sequence variation",
"gene_plays_role_in_process", "gene plays role in process",
"gene_product_affected_by_chemical_or_drug", "gene product affected by chemical or drug",
"gene_product_encoded_by_gene", "gene product encoded by gene",
"gene_product_expressed_in_tissue", "gene product expressed in tissue",
"gene_product_has_abnormality", "gene product has abnormality",
"gene_product_has_associated_anatomy", "gene product has associated anatomy",
"gene_product_has_biochemical_function", "gene product has biochemical function",
"gene_product_has_chemical_classification", "gene product has chemical classification",
"gene_product_has_gene_product_variant", "gene product has gene product variant",
"gene_product_has_organism_source", "gene product has organism source",
"gene_product_has_structural_domain_or_motif", "gene product has structural domain or motif",
"gene_product_is_biomarker_of", "gene product is biomarker of",
"gene_product_is_biomarker_type", "gene product is biomarker type",
"gene_product_is_element_in_pathway", "gene product is element in pathway",
"gene_product_is_physical_part_of", "gene product is physical part of",
"gene_product_malfunction_associated_with_disease", "gene product malfunction associated with disease",
"gene_product_plays_role_in_biological_process", "gene product plays role in biological process",
"gene_product_sequence_variation_encoded_by_gene_mutant", "gene product sequence variation encoded by gene mutant",
"gene_product_variant_of_gene_product", "gene product variant of gene product",
"genetic_biomarker_related_to", "genetic biomarker related to",
"germ_origin_of", "Germ origin of",
"grade_of", "grade of",
"happens_during", "Happens during",
"has_access_instrument", "Has access instrument",
"has_access", "Has access",
"has_action_guidance", "Has action guidance",
"has_active_ingredient", "Has active ingredient",
"has_active_metabolites", "Has active metabolites",
"has_active_moiety", "Has Active Moiety",
"has_actual_outcome", "Has actual outcome",
"has_add_on_code", "Has add on code (Report with)",
"has_adherent", "Has adherent",
"has_adjustment", "Has adjustment",
"has_aggregation_view", "Has aggregation view",
"has_alias", "Has alias",
"has_allelic_variant", "Has allelic variant",
"has_alternative", "Has alternative",
"has_answer", "has answer",
"has_approach_guidance", "Has approach guidance",
"has_approach", "Has approach",
"has_archetype", "Has archetype",
"has_arterial_supply", "Has arterial supply",
"has_associated_condition", "has_associated_condition",
"has_associated_etiologic_finding", "Has associated etiologic finding",
"has_associated_finding", "Has associated finding",
"has_associated_function", "Has associated function",
"has_associated_morphology", "Has associated morphology",
"has_associated_procedure", "Has associated procedure",
"has_at_risk_population", "Has at risk population",
"has_basic_dose_form", "Has basic dose form",
"has_basis_of_strength_substance", "Has basis of strength substance",
"has_branch", "Has branch",
"has_british_form", "Has British form",
"has_causative_agent", "Has causative agent",
"has_cdrh_parent", "has cdrh parent",
"has_challenge", "Has challenge",
"has_class", "Has class",
"has_clinical_course", "Has clinical course",
"has_clinician_form", "Has clinician form",
"has_common_name", "Has common name",
"has_communication_with_wound", "Has communication with wound",
"has_component", "Has component",
"has_concentration_strength_denominator_unit", "Has concentration strength denominator unit",
"has_concentration_strength_denominator_value", "Has concentration strength denominator value",
"has_concentration_strength_numerator_unit", "Has concentration strength numerator unit",
"has_concentration_strength_numerator_value", "Has concentration strength numerator value",
"has_conceptual_part", "Has conceptual part",
"has_connection_type", "has connection type",
"has_constitutional_part", "Has constitutional part",
"has_consumer_friendly_form", "Has consumer friendly form",
"has_context_binding", "Has context binding",
"has_continuation_branch", "Has continuation branch",
"has_contraindicated_class", "Has contraindicated class",
"has_contraindicated_drug", "Has contraindicated drug",
"has_contraindicated_mechanism_of_action", "Has contraindicated mechanism of action",
"has_contraindicated_physiologic_effect", "Has contraindicated physiologic effect",
"has_count_of_base_of_active_ingredient", "Has count of base of active ingredient",
"has_count", "Has count",
"has_course", "Has course",
"has_ctcae_5_parent", "has ctcae_5 parent",
"has_data_element", "has data element",
"has_defining_characteristic", "Has defining characteristic",
"has_definitional_manifestation", "Has definitional manifestation",
"has_degree", "Has degree",
"has_dependent", "Has dependent",
"has_development_type", "has development type",
"has_developmental_stage", "has developmental stage",
"has_diagnostic_criteria", "ICD has DSM-5 diagnostic criteria",
"has_direct_cell_shape", "has direct cell shape",
"has_direct_device", "Has direct device",
"has_direct_morphology", "Has direct morphology",
"has_direct_procedure_site", "Has direct procedure site",
"has_direct_site", "Has direct site",
"has_direct_substance", "Has direct substance",
"has_disposition", "Has disposition",
"has_divisor", "Has divisor",
"has_dose_form_administration_method", "Has dose form administration method",
"has_dose_form_intended_site", "Has dose form intended site",
"has_dose_form_release_characteristic", "Has dose form release characteristic",
"has_dose_form_transformation", "Has dose form transformation",
"has_dose_form", "Has dose form",
"has_doseformgroup", "Has dose form group",
"has_entire_anatomy_structure", "Has entire anatomy structure",
"has_entry_combination", "Has Entry Combination",
"has_entry_version", "Has entry version",
"has_episodicity", "Has episodicity",
"has_evaluation", "Has evaluation",
"has_exam", "Has exam",
"has_excluded_approach", "Has excluded approach",
"has_excluded_associated_finding", "Has excluded associated finding",
"has_excluded_associated_procedure", "Has excluded associated procedure",
"has_excluded_component", "Has excluded component",
"has_excluded_locale", "Has excluded locale",
"has_excluded_method", "Has excluded method",
"has_excluded_pathology", "Has excluded pathology",
"has_excluded_patient_type", "Has excluded patient type",
"has_excluded_procedure_device", "Has excluded procedure device",
"has_excluded_procedure_site", "Has excluded procedure site",
"has_excluded_route_of_administration", "Has excluded route of administration",
"has_excluded_specimen", "Has excluded specimen",
"has_excluded_surgical_extent", "Has excluded surgical extent",
"has_expanded_form", "Has expanded form",
"has_expected_outcome", "Has expected outcome",
"has_extent", "Has extent",
"has_finding_context", "Has finding context",
"has_finding_informer", "Has finding informer",
"has_finding_method", "Has finding method",
"has_finding_site", "Has finding_site",
"has_focus", "Has focus",
"has_form", "Has form",
"has_fragments_for_synonyms", "Has fragments for synonyms",
"has_free_acid_or_base_form", "has free acid or base form",
"has_full_grown_phenotype", "has full grown phenotype",
"has_fusion", "has fusion",
"has_gene_product_element", "has gene product element",
"has_germ_origin", "Has germ origin",
"has_given_pharmaceutical_substance", "Has given pharmaceutical substance",
"has_grade", "has grade",
"has_imaged_location", "Has imaged location",
"has_imaging_focus", "Has imaging focus",
"has_inactive_ingredient", "Has Inactive Ingredient",
"has_inc_parent", "has inc parent",
"has_indirect_device", "Has indirect device",
"has_indirect_morphology", "Has indirect morphology",
"has_indirect_procedure_site", "Has indirect procedure site",
"has_ingredients", "Has ingredients",
"has_ingredient", "Has ingredient",
"has_inherent_3d_shape", "Has inherent 3-D shape",
"has_inherent_attribute", "Has inherent attribute",
"has_inherent_location", "Has inherent location",
"has_inheritance_type", "Has inheritance type",
"has_insertion", "has insertion",
"has_instrumentation", "Has instrumentation",
"has_intent", "Has intent",
"has_interpretation", "Has interpretation",
"has_lab_number", "Has lab number",
"has_lateral_anatomic_location", "Has lateral anatomic location",
"has_lateral_location_presence", "Has lateral location presence",
"has_laterality", "Has laterality",
"has_life_circumstance", "Has life circumstance",
"has_locale", "Has locale",
"has_location", "Has location",
"has_loinc_number", "Has Loinc number",
"has_lymphatic_drainage", "Has lymphatic drainage",
"has_manifestation", "Has manifestation",
"has_mapping_qualifier", "Has mapping qualifier",
"has_measured_component", "has_measured_component",
"has_measurement_method", "Has measurement method",
"has_mechanism_of_action", "Has mechanism of action",
"has_member", "Has member",
"has_method", "Has method",
"has_modality_subtype", "Has modality subtype",
"has_modality_type", "has modality type",
"has_modification", "Has modification",
"has_multi_level_category", "Has multi-level category",
"has_multipart", "Has multipart",
"has_nerve_supply", "Has nerve supply",
"has_nichd_parent", "has nichd parent",
"has_object_guidance", "Has object guidance",
"has_observed_anatomical_entity", "has observed anatomical entity",
"has_occurrence", "Has occurrence",
"has_onset", "Has onset",
"has_origin", "Has origin",
"has_owning_affiliate", "Has owning affiliate",
"has_owning_section", "Has owning section",
"has_owning_subsection", "Has owning subsection",
"has_panel_element", "CPT laboratory panel code has laboratory panel test member",
"has_parent_group", "Has parent group",
"has_parent", "Has parent",
"has_part_anatomy_structure", "Has part anatomy structure",
"has_part", "Has part",
"has_pathological_process", "Has pathological process",
"has_pathology", "Has pathology",
"has_patient_type", "Has patient type",
"has_permuted_term", "Has permuted term",
"has_pharmaceutical_administration_method", "has pharmaceutical administration method",
"has_pharmaceutical_basic_dose_form", "has pharmaceutical basic dose form",
"has_pharmaceutical_intended_site", "has pharmaceutical intended site",
"has_pharmaceutical_release_characteristics", "has pharmaceutical release characteristics",
"has_pharmaceutical_route", "Has_pharmaceutical_route",
"has_pharmaceutical_state_of_matter", "has pharmaceutical state of matter",
"has_pharmaceutical_transformation", "has pharmaceutical transformation",
"has_pharmacokinetics", "Has pharmacokinetics",
"has_phenotype", "Has phenotype",
"has_physical_part_of_anatomic_structure", "has physical part of anatomic structure",
"has_physiologic_effect", "Has physiologic effect",
"has_physiologic_state", "Has physiologic state",
"has_possibly_included_approach", "Has possibly included approach",
"has_possibly_included_associated_finding", "Has possibly included associated finding",
"has_possibly_included_associated_procedure", "Has possibly included associated procedure",
"has_possibly_included_component", "Has possibly included component",
"has_possibly_included_method", "Has possibly included method",
"has_possibly_included_panel_element", "CPT laboratory panel code has possibly included laboratory panel test member",
"has_possibly_included_pathology", "Has possibly included pathology",
"has_possibly_included_patient_type", "Has possibly included patient type",
"has_possibly_included_procedure_device", "Has possibly included procedure device",
"has_possibly_included_procedure_site", "Has possibly included procedure site",
"has_possibly_included_route_of_administration", "Has possibly included route of administration",
"has_possibly_included_surgical_extent", "Has possibly included surgical extent",
"has_precise_active_ingredient", "Has precise active ingredient",
"has_precise_ingredient", "Has precise ingredient",
"has_precondition", "Has precondition",
"has_presence_guidance", "Has presence guidance",
"has_presentation_strength_denominator_unit", "Has presentation strength denominator unit",
"has_presentation_strength_denominator_value", "Has presentation strength denominator value",
"has_presentation_strength_numerator_unit", "Has presentation strength numerator unit",
"has_presentation_strength_numerator_value", "Has presentation strength numerator value",
"has_primary_segmental_supply", "Has primary segmental supply",
"has_print_name", "Has print name",
"has_priority", "Has priority",
"has_procedure_context", "Has procedure context",
"has_procedure_device", "Has procedure device",
"has_procedure_morphology", "Has procedure morphology",
"has_procedure_site", "Has procedure site",
"has_process_duration", "Has process duration",
"has_process_output", "Has process output",
"has_product_monograph_title", "has product monograph title",
"has_projection", "has projection",
"has_property_type", "Has property type",
"has_property", "Has property",
"has_quantified_form", "Has quantified form",
"has_realization", "Has realization",
"has_recipient_category", "Has recipient category",
"has_regional_part", "Has regional part",
"has_related_developmental_entity", "has related developmental entity",
"has_related_factor", "Has related factor",
"has_result", "Has result",
"has_revision_status", "Has revision status",
"has_risk_factor", "Has risk factor",
"has_route_of_administration", "Has route of administration",
"has_salt_form", "has salt form",
"has_scale_type", "Has scale type",
"has_scale", "Has scale",
"has_secondary_segmental_supply", "Has secondary segmental supply",
"has_segmental_composition", "Has segmental composition",
"has_segmental_supply", "Has segmental supply",
"has_severity", "Has severity",
"has_sign_or_symptom", "Has sign or symptom",
"has_single_level_category", "Has single level category",
"has_sort_version", "Has sort version",
"has_specialty", "Has specialty",
"has_specimen_procedure", "Has specimen procedure",
"has_specimen_source_identity", "Has specimen source identity",
"has_specimen_source_morphology", "Has specimen source morphology",
"has_specimen_source_topography", "Has specimen source topography",
"has_specimen_substance", "Has specimen substance",
"has_specimen", "Has specimen",
"has_stage", "Has stage",
"has_state_of_matter", "Has state of matter",
"has_structural_class", "Has structural class",
"has_subject_of_information", "Has subject of information",
"has_subject_relationship_context", "Has subject relationship context",
"has_subject", "Has subject",
"has_suffix", "Has suffix",
"has_supersystem", "Has supersystem",
"has_supported_concept_property", "Has supported concept property",
"has_supported_concept_relationship", "Has supported concept relationship",
"has_surgical_approach", "has surgical approach",
"has_surgical_extent", "Has surgical extent",
"has_system", "Has system",
"has_target", "has target",
"has_technique", "Has technique",
"has_temporal_context", "Has temporal context",
"has_therapeutic_class", "Has therapeutic class",
"has_time_aspect", "Has time aspect",
"has_time_modifier", "Has time modifier",
"has_timing_of", "Has timing of",
"has_tradename", "Has tradename",
"has_translation", "Has translation",
"has_transliterated_form", "Has transliterated form",
"has_tributary", "Has tributary",
"has_unit_of_presentation", "Has unit of presentation",
"has_units", "Has units",
"has_venous_drainage", "Has venous drainage",
"has_version", "Has version",
"has_view_type", "Has view type",
"homonym_for", "Homonym for",
"homonym_of", "Homonym of",
"human_disease_maps_to_eo_disease", "human disease maps to eo disease",
"icd_asterisk", "ICD asterisk",
"icd_dagger", "ICD dagger",
"imaged_anatomy_has_procedure", "imaged anatomy has procedure",
"inactive_ingredient_of", "Inactive Ingredient Of",
"inc_parent_of", "inc parent of",
"included_in", "included_in",
"includes_sub_specimen", "Includes sub specimen",
"includes", "includes",
"indirect_device_of", "Indirect device of",
"indirect_morphology_of", "Indirect morphology of",
"indirect_procedure_site_of", "Indirect procedure site of",
"induced_by", "Induced by",
"induces", "Induces",
"inferior_to", "inferior to",
"inferolateral_to", "inferolateral to",
"inferomedial_to", "inferomedial to",
"ingredient_of", "Ingredient of",
"ingredients_of", "Ingredients of",
"inherent_3d_shape_of", "Inherent 3-D shape of",
"inherent_location_of", "Inherent location of",
"inheres_in", "Inheres in",
"inheritance_type_of", "Inheritance type of",
"insertion_of", "insertion of",
"instrumentation_of", "Instrumentation of",
"intent_of", "Intent of",
"internal_to", "internal to",
"interpretation_of", "Interpretation of",
"interprets", "Interprets",
"inverse_during_and_or_after", "inverse During AND/OR after",
"inverse_during", "Inverse during",
"inverse_ends_during", "Inverse ends during",
"inverse_happens_during", "Inverse happens during",
"inverse_isa", "Inverse is a",
"inverse_was_a", "Inverse was a",
"is_abnormal_cell_of_disease", "is abnormal cell of disease",
"is_abnormality_of_gene_product", "is abnormality of gene product",
"is_abnormality_of_gene", "is abnormality of gene",
"is_action_guidance_for", "Is action guidance for",
"is_aggregation_view_of", "Is aggregation view of",
"is_approach_guidance_for", "Is approach guidance for",
"is_associated_anatomic_site_of", "is associated anatomic site of",
"is_associated_anatomy_of_gene_product", "is associated anatomy of gene product",
"is_associated_disease_of", "is associated disease of",
"is_biochemical_function_of_gene_product", "is biochemical function of gene product",
"is_chemical_classification_of_gene_product", "is chemical classification of gene product",
"is_chromosomal_location_of_gene", "is chromosomal location of gene",
"is_component_of_chemotherapy_regimen", "is component of chemotherapy regimen",
"is_cytogenetic_abnormality_of_disease", "is cytogenetic abnormality of disease",
"is_exam_for", "Is exam for",
"is_finding_of_disease", "is finding of disease",
"is_given_pharmaceutical_substance_for", "Is given pharmaceutical substance for",
"is_grade_of_disease", "is grade of disease",
"is_imaged_location_for", "Is imaged location for",
"is_imaging_focus_of", "Is imaging focus of",
"is_interpreted_by", "Is interpreted by",
"is_lateral_anatomic_location_of", "Is lateral anatomic location of",
"is_location_of_anatomic_structure", "is location of anatomic structure",
"is_location_of_biological_process", "is location of biological process",
"is_marked_by_gene_product", "is marked by gene product",
"is_mechanism_of_action_of_chemical_or_drug", "is mechanism of action of chemical or drug",
"is_metastatic_anatomic_site_of_disease", "is metastatic anatomic site of disease",
"is_modality_subtype_for", "Is modality subtype for",
"is_modality_type_for", "Is modality type for",
"is_modification_of", "Is modification of",
"is_molecular_abnormality_of_disease", "is molecular abnormality of disease",
"is_normal_cell_origin_of_disease", "is normal cell origin of disease",
"is_normal_tissue_origin_of_disease", "is normal tissue origin of disease",
"is_not_abnormal_cell_of_disease", "is not abnormal cell of disease",
"is_not_cytogenetic_abnormality_of_disease", "is not cytogenetic abnormality of disease",
"is_not_finding_of_disease", "is not finding of disease",
"is_not_metastatic_anatomic_site_of_disease", "is not metastatic anatomic site of disease",
"is_not_molecular_abnormality_of_disease", "is not molecular abnormality of disease",
"is_not_normal_cell_origin_of_disease", "is not normal cell origin of disease",
"is_not_normal_tissue_origin_of_disease", "is not normal tissue origin of disease",
"is_not_primary_anatomic_site_of_disease", "is not primary anatomic site of disease",
"is_object_guidance_for", "Is object guidance for",
"is_organism_source_of_gene_product", "is organism source of gene product",
"is_pharmaceutical_route_for", "Is pharmaceutical route for",
"is_physical_location_of_gene", "is physical location of gene",
"is_physiologic_effect_of_chemical_or_drug", "is physiologic effect of chemical or drug",
"is_presence_guidance_for", "Is presence guidance for",
"is_presence_of_lateral_location", "Is presence of lateral location",
"is_primary_anatomic_site_of_disease", "is primary anatomic site of disease",
"is_property_or_attribute_of_eo_disease", "is property or attribute of eo disease",
"is_qualified_by", "is qualified by",
"is_related_to_endogenous_product", "Is Related To Endogenous Product",
"is_stage_of_disease", "is stage of disease",
"is_structural_domain_or_motif_of_gene_product", "is structural domain or motif of gene product",
"is_subject_of", "Is subject of",
"is_target", "is target",
"is_timing_for", "Is timing for",
"is_view_type_for", "Is view type for",
"isa", "Is a",
"kind_is_domain_of", "kind is domain of",
"kind_is_range_of", "kind is range of",
"lab_number_of", "Lab number",
"larger_than", "Larger Than",
"lateral_to", "lateral to",
"laterality_of", "Laterality of",
"left_lateral_to", "left lateral to",
"left_medial_to", "left medial to",
"life_circumstance_of", "Life circumstance of",
"locale_of_excluded", "Locale of excluded",
"locale_of", "Locale of",
"location_of", "Location of",
"loinc_number_of", "Loinc number of",
"lymphatic_drainage_of", "Lymphatic drainage of",
"manifestation_of", "Manifestation of",
"manufactured_by", "manufactured by",
"manufactures", "manufactures",
"mapped_from", "Mapped from",
"mapped_to", "Mapped to",
"mapping_qualifier_of", "Mapping qualifier of",
"matures_from", "matures from",
"matures_into", "matures into",
"may_be_abnormal_cell_of_disease", "may be abnormal cell of disease",
"may_be_associated_disease_of_disease", "may be associated disease of disease",
"may_be_cytogenetic_abnormality_of_disease", "may be cytogenetic abnormality of disease",
"may_be_diagnosed_by", "May be diagnosed by",
"may_be_finding_of_disease", "may be finding of disease",
"may_be_molecular_abnormality_of_disease", "may be molecular abnormality of disease",
"may_be_normal_cell_origin_of_disease", "may be normal cell origin of disease",
"may_be_prevented_by", "May be prevented by",
"may_be_qualified_by", "May be qualified by",
"may_be_treated_by", "May be treated by",
"may_diagnose", "May diagnose",
"may_inhibit_effect_of", "May inhibit effect of",
"may_prevent", "May prevent",
"may_qualify", "May qualify",
"may_treat", "May treat",
"measured_by", "Measured by",
"measured_component_of", "measured_component_of",
"measurement_method_of", "Measurement method of",
"measures", "Measures",
"mechanism_of_action_of", "Mechanism of action of",
"medial_to", "medial to",
"member_of", "Member of",
"merges_with", "merges with",
"metabolic_site_of", "Metabolic site of",
"method_of_excluded", "Method of excluded",
"method_of_possibly_included", "Method of possibly included",
"method_of", "Method of",
"modified_by", "Modified by",
"modifies", "Modifies",
"molecular_abnormality_involves_gene", "molecular abnormality involves gene",
"moved_from", "Moved from",
"moved_to", "Moved to",
"mth_british_form_of", "MTH British form of",
"mth_expanded_form_of", "MTH expanded form of",
"mth_has_british_form", "MTH has British form",
"mth_has_expanded_form", "MTH has expanded form",
"mth_has_plain_text_form", "Has plain text form, Metathesaurus-asserted",
"mth_has_xml_form", "Has XML form, Metathesaurus-asserted",
"mth_plain_text_form_of", "Plain text form of, Metathesaurus-asserted",
"mth_xml_form_of", "XML form of, Metathesaurus-asserted",
"multipart_of", "Multipart of",
"multiply_mapped_from", "Multiply mapped from",
"multiply_mapped_to", "Multiply mapped to",
"negatively_regulated_by", "Negatively regulated by",
"negatively_regulates", "Negatively regulates",
"neoplasm_has_special_category", "neoplasm has special category",
"nerve_supply_of", "Nerve supply of",
"nichd_parent_of", "nichd parent of",
"noun_form_of", "Noun form of",
"occurs_after", "Occurs after",
"occurs_before", "Occurs before",
"occurs_in", "Occurs in",
"onset_of", "Onset of",
"organism_has_gene", "organism has gene",
"origin_of", "Origin of",
"other_mapped_from", "Other mapped from",
"other_mapped_to", "Other mapped to",
"owning_affiliate_of", "Owning affiliate of",
"owning_section_of", "Owning section of",
"owning_subsection_of", "Owning subsection of",
"panel_element_of_possibly_included", "CPT laboratory panel test member is possibly included element of laboratory code",
"panel_element_of", "CPT laboratory panel test member is element of laboratory code",
"parent_group_of", "Parent group of",
"parent_of", "Parent of",
"part_anatomy_structure_of", "Part anatomy structure of",
"part_of", "Part of",
"part_referred_to_by", "Part referred to by",
"partially_excised_anatomy_has_procedure", "partially excised anatomy has procedure",
"partially_excised_anatomy_may_have_procedure", "partially excised anatomy may have procedure",
"pathogenesis_of_disease_involves_gene", "pathogenesis of disease involves gene",
"pathological_process_of", "Pathological process of",
"pathology_of_excluded", "Pathology of excluded",
"pathology_of_possibly_included", "Pathology of possibly included",
"pathology_of", "Pathology of",
"pathway_has_gene_element", "pathway has gene element",
"patient_type_of_excluded", "Patient type of excluded",
"patient_type_of_possibly_included", "Patient type of possibly included",
"patient_type_of", "Patient type of",
"permuted_term_of", "Permuted term of",
"pharmaceutical_administration_method_of", "pharmaceutical administration method of",
"pharmaceutical_basic_dose_form_of", "pharmaceutical basic dose form of",
"pharmaceutical_intended_site_of", "pharmaceutical intended site of",
"pharmaceutical_release_characteristics_of", "pharmaceutical release characteristics of",
"pharmaceutical_state_of_matter_of", "pharmaceutical state of matter of",
"pharmaceutical_transformation_of", "pharmaceutical transformation_of",
"pharmacokinetics_of", "Pharmacokinetics of",
"phenotype_of", "Phenotype of",
"physiologic_effect_of", "Physiologic effect of",
"physiologic_state_of", "Physiologic state of",
"plays_role", "Plays role",
"population_at_risk_for", "Population at risk for",
"positively_regulated_by", "Positively regulated by",
"positively_regulates", "Positively regulates",
"possibly_equivalent_to", "Possibly equivalent to",
"posterior_to", "posterior to",
"posteroinferior_to", "posteroinferior to",
"posterolateral_to", "posterolateral to",
"posteromedial_to", "posteromedial to",
"posterosuperior_to", "posterosuperior to",
"precise_active_ingredient_of", "Precise active ingredient of",
"precise_ingredient_of", "Precise ingredient of",
"precondition_of", "Precondition of",
"presentation_strength_denominator_unit_of", "Presentation strength denominator unit of",
"presentation_strength_denominator_value_of", "Presentation strength denominator value of",
"presentation_strength_numerator_unit_of", "Presentation strength numerator unit of",
"presentation_strength_numerator_value_of", "Presentation strength numerator value of",
"primary_mapped_from", "Primary mapped from",
"primary_mapped_to", "Primary mapped to",
"primary_segmental_supply_of", "Primary segmental supply of",
"print_name_of", "Print name of",
"priority_of", "Priority of",
"procedure_context_of", "Procedure context of",
"procedure_device_of_excluded", "Procedure device of excluded",
"procedure_device_of_possibly_included", "Procedure device of possibly included",
"procedure_device_of", "Procedure device of",
"procedure_has_completely_excised_anatomy", "procedure has completely excised anatomy",
"procedure_has_excised_anatomy", "procedure has excised anatomy",
"procedure_has_imaged_anatomy", "procedure has imaged anatomy",
"procedure_has_partially_excised_anatomy", "procedure has partially excised anatomy",
"procedure_has_tardoc_anatomy", "procedure has target anatomy",
"procedure_may_have_completely_excised_anatomy", "procedure may have completely excised anatomy",
"procedure_may_have_excised_anatomy", "procedure may have excised anatomy",
"procedure_may_have_partially_excised_anatomy", "procedure may have partially excised anatomy",
"procedure_morphology_of", "Procedure morphology of",
"procedure_site_of_excluded", "Procedure site of excluded",
"procedure_site_of_possibly_included", "Procedure site of possibly included",
"procedure_site_of", "Procedure site of",
"process_altered_by_allele", "process altered by allele",
"process_duration_of", "Process duration of",
"process_includes_biological_process", "process includes biological process",
"process_initiates_biological_process", "process initiates biological process",
"process_involves_gene", "process involves gene",
"process_output_of", "Process output of",
"product_monograph_title_of", "product monograph title of",
"projects_from", "projects from",
"projects_to", "projects to",
"property_of", "Property of",
"property_type_of", "Property type of",
"proximal_to", "proximal to",
"qualifier_applies_to", "qualifier applies to",
"quantified_form_of", "Quantified form of",
"realization_of", "Realization of",
"receives_attachment_from", "receives attachment from",
"receives_drainage_from", "receives drainage from",
"receives_input_from", "Receives input from",
"receives_projection", "receives projection",
"recipient_category_of", "Recipient category of",
"referred_to_by", "referred to by",
"refers_to", "refers to",
"reformulated_to", "Reformulated to",
"reformulation_of", "Reformulation of",
"regimen_has_accepted_use_for_disease", "Regimen Has Accepted Use For Disease",
"regional_part_of", "Regional part of",
"regulated_by", "Regulated by",
"regulates", "Regulates",
"related_developmental_entity_of", "related developmental entity of",
"related_factor_of", "Related factor of",
"related_object", "related object",
"related_part", "related part",
"related_to_genetic_biomarker", "related to genetic biomarker",
"related_to", "Is Related to",
"relative_to_part_of", "Relative to part of",
"replaced_by", "Replaced by",
"replaces", "Replaces",
"result_of", "Result of",
"revision_status_of", "Revision status of",
"right_lateral_to", "right lateral to",
"right_medial_to", "right medial to",
"risk_factor_of", "Risk factor of",
"role_has_domain", "role has domain",
"role_has_parent", "role has parent",
"role_has_range", "role has range",
"role_is_parent_of", "role is parent of",
"role_played_by", "Role played by",
"route_of_administration_of_excluded", "Route of administration of excluded",
"route_of_administration_of_possibly_included", "Route of administration of possibly included",
"route_of_administration_of", "Route of administration of",
"same_as", "Same as",
"scale_of", "Scale of",
"scale_type_of", "Scale type of",
"secondary_segmental_supply_of", "Secondary segmental supply of",
"see_from", "See from",
"see", "See",
"segmental_composition_of", "Segmental composition of",
"segmental_supply_of", "Segmental supply of",
"sends_output_to", "Sends output to",
"severity_of", "Severity of",
"sib_in_branch_of", "Sibling in branch of",
"sib_in_isa", "Sibling in is a",
"sib_in_part_of", "Sibling in part of",
"sib_in_tributary_of", "Sibling in tributary of",
"sign_or_symptom_of", "Sign or symptom of",
"site_of_metabolism", "Site of metabolism",
"smaller_than", "Smaller Than",
"sort_version_of", "Sort version of",
"special_category_includes_neoplasm", "special category includes neoplasm",
"specialty_of", "Specialty of",
"specimen_of_excluded", "Specimen of excluded",
"specimen_of", "Specimen of",
"specimen_procedure_of", "Specimen procedure of",
"specimen_source_identity_of", "Specimen source identity of",
"specimen_source_morphology_of", "Specimen source morphology of",
"specimen_source_topography_of", "specimen source topography of",
"specimen_substance_of", "Specimen substance of",
"ssc", "scc",
"stage_of", "Stage of",
"state_of_matter_of", "State of matter of",
"structural_class_of", "Has structural class",
"sub_specimen_included_by", "Sub specimen included by",
"subject_of_information_of", "Subject of information of",
"subject_relationship_context_of", "Subject relationship context of",
"subset_includes_concept", "subset includes concept",
"substance_used_by_excluded", "Substance used by excluded",
"substance_used_by_possibly_included", "Substance used by possibly included",
"substance_used_by", "Substance used by",
"suffix_of", "Suffix of",
"superior_to", "superior to",
"superolateral_to", "superolateral to",
"superomedial_to", "superomedial to",
"supersystem_of", "Supersystem of",
"supported_concept_property_in", "Supported concept property in",
"supported_concept_relationship_in", "Supported concept relationship in",
"surgical_approach_of", "surgical approach of",
"surgical_extent_of_excluded", "Surgical extent of excluded",
"surgical_extent_of_possibly_included", "Surgical extent of possibly included",
"surgical_extent_of", "Surgical extent of",
"surrounded_by", "Surrounded by",
"surrounds", "Surrounds",
"system_of", "System of",
"tardoc_anatomy_has_procedure", "target anatomy has procedure",
"technique_of", "Technique of",
"temporal_context_of", "Temporal context of",
"temporally_followed_by", "Temporally followed by",
"temporally_follows", "Temporally follows",
"temporally_related_to", "Temporally related to",
"therapeutic_class_of", "Therapeutic class of",
"time_aspect_of", "Time aspect of",
"time_modifier_of", "Time modifier of",
"tissue_is_expression_site_of_gene_product", "tissue is expression site of gene product",
"tradename_of", "Tradename of",
"transforms_from", "transforms from",
"transforms_into", "transforms into",
"translation_of", "Translation of",
"transliterated_form_of", "transliterated_form_of",
"treated_by", "Treated by",
"treats", "Treats",
"tributary_of", "Tributary of",
"uniquely_mapped_from", "Uniquely mapped from",
"uniquely_mapped_to", "Uniquely mapped to",
"unit_of_presentation_of", "Unit of presentation of",
"units_of", "Units of",
"used_by", "Used by",
"used_for", "Used for",
"uses_access_device", "Uses access device",
"uses_device", "Uses device",
"uses_energy", "Uses energy",
"uses_excluded_substance", "Uses excluded substance",
"uses_possibly_included_substance", "Uses possibly included substance",
"uses_substance", "Uses substance",
"uses", "Uses",
"use", "Use",
"venous_drainage_of", "Venous drainage of",
"version_of", "Version of",
"was_a", "Was a",
"wound_has_communication_with", "Wound has communication with",
"", "Empty relationship attribute"
),
SRL = tibble::tribble(
~SRL,~`SRL Description`,
"0", "No additional restrictions; general terms of the license agreement apply.",
"1", "General terms + additional restrictions in category 12.1",
"2", "General terms + additional restrictions in category 12.2",
"3", "General terms + additional restrictions in category 12.3",
"4", "General terms + additional restrictions in category 12.4",
"9", "General terms + SNOMED CT Affiliate License in Appendix 2"
),
STT = tibble::tribble(
~`STT (String Type)`,~`STT Description`,
"PF", "Preferred form of term",
"VCW", "Case and word-order variant of the preferred form",
"VC", "Case variant of the preferred form",
"VO", "Variant of the preferred form",
"VW", "Word-order variant of the preferred form"
),
STYPE = tibble::tribble(
~`STYPE (Column name in MRCONSO.RRF or MRREL.RRF with identifier to which attribute is attached)`,~`STYPE Description`,
"AUI", "Atom identifier",
"CODE", "Unique Identifier or code for string in source",
"CUI", "Concept unique identifier",
"RUI", "Relationship identifier",
"SCUI", "Source asserted concept unique identifier",
"SDUI", "Source asserted descriptor identifier"
),
STYPE1 = tibble::tribble(
~`STYPE1 (Column name in MRCONSO.RRF with first identifier to which relationship is attached)`,~`STYPE1 Description`,
"AUI", "Atom identifier",
"CODE", "Unique Identifier or code for string in source",
"CUI", "Concept unique identifier",
"SCUI", "Source asserted concept unique identifier",
"SDUI", "Source asserted descriptor identifier"
),
STYPE2 = tibble::tribble(
~`STYPE2 (Column name in MRCONSO.RRF with second identifier to which relationship is attached)`,~`STYPE2 Description`,
"AUI", "Atom identifier",
"CODE", "Unique Identifier or code for string in source",
"CUI", "Concept unique identifier",
"SCUI", "Source asserted concept unique identifier",
"SDUI", "Source asserted descriptor identifier"
),
SUPPRESS = tibble::tribble(
~SUPPRESS,~`SUPPRESS Description`,
"E", "Suppressible due to editor decision",
"N", "Not suppressible",
"O", "Obsolete, SAB,TTY may be independently suppressible",
"Y", "Suppressible due to SAB,TTY",
"", "Suppressibility not yet assigned by the UMLS"
),
TOTYPE = tibble::tribble(
~`TOTYPE (Type of Expression to Which a Mapping is Mapped)`,~`TOTYPE Description`,
"BOOLEAN_EXPRESSION_CODE", "Boolean expression of CODE values",
"BOOLEAN_EXPRESSION_SDUI", "Boolean expression of SDUI values",
"BOOLEAN_EXPRESSION_STR", "Boolean expression of STR values",
"CODE", "Unique Identifier or code for string in source",
"SCUI", "Source asserted concept unique identifier",
"SDUI", "Source asserted descriptor identifier",
"", "No type, used for XR mappings."
),
TS = tibble::tribble(
~`TS (Term Status)`,~`TS Description`,
"P", "Preferred LUI of the CUI",
"S", "Non-Preferred LUI of the CUI",
"p", "Preferred LUI of the CUI, suppressible (only used in ORF MRCON)",
"s", "Non-Preferred LUI of the CUI, suppressible (only used in ORF MRCON)"
),
TTY = tibble::tribble(
~`TTY (Term Type in Source)`,~`TTY Description`,
"AA", "Attribute type abbreviation",
"AB", "Abbreviation in any source vocabulary",
"ACR", "Acronym",
"AC", "Activities",
"AD", "Adjective",
"AM", "Short form of modifier",
"AS", "Attribute type synonym",
"AT", "Attribute type",
"AUN", "Authority name",
"BD", "Fully-specified drug brand name that can be prescribed",
"BN", "Fully-specified drug brand name that can not be prescribed",
"BPCK", "Branded Drug Delivery Device",
"BR", "Binding realm",
"CA2", "ISO 3166-1 standard country code in alpha-2 (two-letter) format",
"CA3", "ISO 3166-1 standard country code in alpha-3 (three-letter) format",
"CCN", "Chemical code name",
"CCS", "FIPS 10-4 country code",
"CC", "Trimmed ICPC component process",
"CDA", "Clinical drug name in abbreviated format",
"CDC", "Clinical drug name in concatenated format (NDDF), Clinical drug name (NDFRT)",
"CDD", "Clinical drug name in delimited format",
"CDO", "Concept domain",
"CD", "Clinical Drug",
"CE", "Entry term for a Supplementary Concept",
"CHN", "Chemical structure name",
"CL", "Class",
"CMN", "Common name",
"CN", "LOINC official component name",
"CO", "Component name (these are hierarchical terms, as opposed to the LOINC component names which are analytes)",
"CPR", "Concept property",
"CP", "ICPC component process (in original form)",
"CR", "Concept relationship",
"CSN", "Chemical Structure Name",
"CSY", "Code system",
"CS", "Short component process in ICPC, i.e. include some abbreviations",
"CU", "Common usage",
"CV", "Content view",
"CX", "Component, with abbreviations expanded.",
"DC10", "Diagnostic criteria for ICD10 code",
"DC9", "Diagnostic criteria for ICD9 code",
"DEV", "Descriptor entry version",
"DE", "Descriptor",
"DFG", "Dose Form Group",
"DF", "Dose Form",
"DI", "Disease name",
"DN", "Display Name",
"DO", "Domain",
"DP", "Drug Product",
"DSV", "Descriptor sort version",
"DS", "Short form of descriptor",
"DT", "Definitional term, present in the Metathesaurus because of its connection to a Dorlands definition or to a definition created especially for the Metathesaurus",
"EP", "Print entry term",
"EQ", "Equivalent name",
"ES", "Short form of entry term",
"ETAL", "Entry Term Alias",
"ETCF", "Entry term, consumer friendly description",
"ETCLIN", "Entry term, clinician description",
"ET", "Entry term",
"EX", "Expanded form of entry term",
"FBD", "Foreign brand name",
"FI", "Finding name",
"FN", "Full form of descriptor",
"FSY", "Foreign Synonym",
"GLP", "Global period",
"GN", "Generic drug name",
"GO", "Goal",
"GPCK", "Generic Drug Delivery Device",
"GT", "Glossary term",
"HC", "Hierarchical class",
"HD", "Hierarchical descriptor",
"HGJKN1", "Japanese High Level Group Term (kana1)",
"HGJKN", "Japanese High Level Group Term (kana)",
"HG", "High Level Group Term",
"HS", "Short or alternate version of hierarchical term",
"HTJKN1", "Japanese Hierarchical term (kana1)",
"HTJKN", "Japanese Hierarchical term (kana)",
"HTN", "HL7 Table Name",
"HT", "Hierarchical term",
"HX", "Expanded version of short hierarchical term",
"ID", "Nursing indicator",
"IN", "Name for an ingredient",
"IS", "Obsolete Synonym",
"IT", "Index term",
"IVC", "Intervention categories",
"IV", "Intervention",
"LA", "LOINC answer",
"LC", "Long common name",
"LG", "LOINC group",
"LLTJKN1", "Japanese Lower Level Term (kana1)",
"LLTJKN", "Japanese Lower Level Term (kana)",
"LLT", "Lower Level Term",
"LN", "LOINC official fully specified name",
"LO", "Obsolete official fully specified name",
"LPDN", "LOINC parts display name",
"LPN", "LOINC parts name",
"LS", "Expanded system/sample type (The expanded version was created for the Metathesaurus and includes the full name of some abbreviations.)",
"LVDN", "Linguistic variant display name",
"LV", "Lexical variant",
"MD", "CCS multi-level diagnosis categories",
"MH", "Main heading",
"MIN", "name for a multi-ingredient",
"MP", "Preferred names of modifiers",
"MS", "Multum names of branded and generic supplies or supplements",
"MTH_ACR", "MTH acronym",
"MTH_CN", "MTH Component, with abbreviations expanded.",
"MTH_ET", "Metathesaurus entry term",
"MTH_FN", "MTH Full form of descriptor",
"MTH_HG", "MTH High Level Group Term",
"MTH_HT", "MTH Hierarchical term",
"MTH_HX", "MTH Hierarchical term expanded",
"MTH_IS", "Metathesaurus-supplied form of obsolete synonym",
"MTH_LLT", "MTH Lower Level Term",
"MTH_LN", "MTH Official fully specified name with expanded abbreviations",
"MTH_LO", "MTH Expanded LOINC obsolete fully specified name",
"MTH_OAF", "Metathesaurus-supplied form of obsolete active fully specified name",
"MTH_OAP", "Metathesaurus-supplied form of obsolete active preferred term",
"MTH_OAS", "Metathesaurus-supplied form of obsolete active synonym",
"MTH_OET", "Metathesaurus obsolete entry term",
"MTH_OF", "Metathesaurus-supplied form of obsolete fully specified name",
"MTH_OL", "MTH Non-current Lower Level Term",
"MTH_OPN", "Metathesaurus obsolete preferred term, natural language form",
"MTH_OP", "Metathesaurus obsolete preferred term",
"MTH_OS", "MTH System-organ class",
"MTH_PTGB", "Metathesaurus-supplied form of British preferred term",
"MTH_PTN", "Metathesaurus preferred term, natural language form",
"MTH_PT", "Metathesaurus preferred term",
"MTH_RXN_BD", "RxNorm Created BD",
"MTH_RXN_CDC", "RxNorm Created CDC",
"MTH_RXN_CD", "RxNorm Created CD",
"MTH_RXN_DP", "RxNorm Created DP",
"MTH_SI", "MTH Sign or symptom of",
"MTH_SMQ", "Metathesaurus version of Standardised MedDRA Query",
"MTH_SYGB", "Metathesaurus-supplied form of British synonym",
"MTH_SY", "MTH Designated synonym",
"MV", "Multi-level procedure category",
"N1", "Chemical Abstracts Service Type 1 name of a chemical",
"NA", "Name aliases",
"NM", "Name of Supplementary Concept",
"NPT", "HL7 non-preferred for language term",
"NP", "Non-preferred term",
"NS", "Short form of non-preferred term",
"NX", "Expanded form of non-preferred term",
"OAF", "Obsolete active fully specified name",
"OAM", "Obsolete Modifier Abbreviation",
"OAP", "Obsolete active preferred term",
"OAS", "Obsolete active synonym",
"OA", "Obsolete abbreviation",
"OC", "Nursing outcomes",
"OET", "Obsolete entry term",
"OF", "Obsolete fully specified name",
"OLC", "Obsolete Long common name",
"OLG", "Obsolete LOINC group name",
"OLJKN1", "Japanese Non-current Lower Level Term (kana1)",
"OLJKN", "Japanese Non-current Lower Level Term (kana)",
"OL", "Non-current Lower Level Term",
"OM", "Obsolete modifiers in HCPCS",
"ONP", "Obsolete non-preferred for language term",
"OOSN", "Obsolete official short name",
"OPN", "Obsolete preferred term, natural language form",
"OP", "Obsolete preferred name",
"OR", "Orders",
"OSJKN1", "Japanese System-organ class in the WHO Adverse Reaction Terminology (kana1)",
"OSJKN", "Japanese System-organ class in the WHO Adverse Reaction Terminology (kana)",
"OSN", "Official short name",
"OS", "System-organ class",
"PCE", "Preferred entry term for Supplementary Concept",
"PC", "Preferred trimmed term in ICPC",
"PEP", "Preferred entry term",
"PHENO_ET", "Phenotype entry term",
"PHENO", "Phenotype",
"PIN", "Name from a precise ingredient",
"PM", "Machine permutation",
"PN", "Metathesaurus preferred name",
"POS", "Place of service",
"PQ", "Qualifier for a problem",
"PR", "Name of a problem",
"PSC", "Protocol selection criteria",
"PSN", "Prescribable Names",
"PS", "Short forms that needed full specification",
"PTAV", "Preferred Allelic Variant",
"PTCS", "Preferred Clinical Synopsis",
"PTGB", "British preferred term",
"PTJKN1", "Japanese Designated preferred name (kana1)",
"PTJKN", "Japanese Designated preferred name (kana)",
"PTN", "Preferred term, natural language form",
"PT", "Designated preferred name",
"PXQ", "Preferred qualifier term",
"PX", "Expanded preferred terms (pair with PS)",
"QAB", "Qualifier abbreviation",
"QEV", "Qualifier entry version",
"QSV", "Qualifier sort version",
"RAB", "Root abbreviation",
"RHT", "Root hierarchical term",
"RPT", "Root preferred term",
"RSY", "Root synonym",
"RS", "Extracted related names in SNOMED2",
"RT", "Term that is related to, but often considered non-synonymous with, the preferred term",
"RXN_IN", "Rxnorm Preferred Ingredient",
"RXN_PT", "Rxnorm Preferred",
"SBDC", "Semantic Branded Drug Component",
"SBDF", "Semantic branded drug and form",
"SBDG", "Semantic branded drug group",
"SBD", "Semantic branded drug",
"SB", "Named subset of a source",
"SCALE", "Scale",
"SCDC", "Semantic Drug Component",
"SCDF", "Semantic clinical drug and form",
"SCDG", "Semantic clinical drug group",
"SCD", "Semantic Clinical Drug",
"SCN", "Scientific name",
"SC", "Special Category term",
"SD", "CCS single-level diagnosis categories",
"SI", "Name of a sign or symptom of a problem",
"SMQ", "Standardised MedDRA Query",
"SP", "CCS single-level procedure categories",
"SSN", "Source short name, used in the UMLS Knowledge Source Server",
"SS", "Synonymous short forms",
"ST", "Step",
"SU", "Active Substance",
"SX", "Mixed-case component synonym with expanded abbreviations",
"SYGB", "British synonym",
"SYN", "Designated alias",
"SY", "Designated synonym",
"TA", "Task",
"TC", "Term class",
"TG", "Name of the target of an intervention",
"TMSY", "Tall Man synonym",
"TQ", "Topical qualifier",
"TX", "CCPSS synthesized problems for TC termgroup",
"UAUN", "Unique authority name",
"UCN", "Unique common name",
"UE", "Unique equivalent name",
"USN", "Unique scientific name",
"USY", "Unique synonym",
"VAB", "Versioned abbreviation",
"VPT", "Versioned preferred term",
"VSY", "Versioned synonym",
"VS", "Value Set",
"XD", "Expanded descriptor in AOD",
"XM", "Cross mapping set",
"XQ", "Alternate name for a qualifier"
),
TTY = tibble::tribble(
~`TTY (tty_class)`,~`TTY (tty_class) Description`,
"AA", "abbreviation",
"AA", "attribute",
"AB", "abbreviation",
"ACR", "abbreviation",
"AC", "preferred",
"AD", "attribute",
"AM", "abbreviation",
"AM", "attribute",
"AS", "attribute",
"AS", "synonym",
"AT", "attribute",
"AUN", "synonym",
"BD", "preferred",
"BN", "preferred",
"BPCK", "preferred",
"BR", "preferred",
"CA2", "abbreviation",
"CA3", "abbreviation",
"CCN", "synonym",
"CCS", "synonym",
"CC", "preferred",
"CDA", "abbreviation",
"CDC", "preferred",
"CDD", "synonym",
"CDO", "preferred",
"CD", "preferred",
"CE", "entry_term",
"CHN", "synonym",
"CL", "hierarchical",
"CMN", "preferred",
"CN", "preferred",
"CO", "hierarchical",
"CPR", "preferred",
"CP", "preferred",
"CR", "preferred",
"CSN", "synonym",
"CS", "abbreviation",
"CSY", "preferred",
"CU", "synonym",
"CV", "preferred",
"CX", "expanded",
"CX", "preferred",
"DC10", "preferred",
"DC9", "preferred",
"DE", "preferred",
"DEV", "abbreviation",
"DFG", "preferred",
"DF", "preferred",
"DI", "preferred",
"DN", "synonym",
"DO", "hierarchical",
"DP", "preferred",
"DS", "abbreviation",
"DSV", "abbreviation",
"DT", "other",
"EP", "entry_term",
"EQ", "synonym",
"ES", "abbreviation",
"ES", "entry_term",
"ETAL", "entry_term",
"ETCF", "entry_term",
"ETCLIN", "entry_term",
"ET", "entry_term",
"EX", "entry_term",
"EX", "expanded",
"FBD", "synonym",
"FI", "preferred",
"FN", "preferred",
"FSY", "synonym",
"GLP", "preferred",
"GN", "preferred",
"GO", "preferred",
"GPCK", "preferred",
"GT", "entry_term",
"HC", "hierarchical",
"HD", "hierarchical",
"HGJKN1", "hierarchical",
"HGJKN", "hierarchical",
"HG", "hierarchical",
"HS", "abbreviation",
"HS", "hierarchical",
"HTJKN1", "hierarchical",
"HTJKN1", "preferred",
"HTJKN", "hierarchical",
"HTJKN", "preferred",
"HTN", "preferred",
"HT", "hierarchical",
"HT", "preferred",
"HX", "expanded",
"HX", "hierarchical",
"ID", "abbreviation",
"ID", "preferred",
"IN", "preferred",
"IS", "obsolete",
"IS", "synonym",
"IT", "entry_term",
"IVC", "preferred",
"IV", "preferred",
"LA", "preferred",
"LC", "preferred",
"LG", "preferred",
"LLTJKN1", "entry_term",
"LLTJKN", "entry_term",
"LLT", "entry_term",
"LN", "preferred",
"LO", "obsolete",
"LPDN", "preferred",
"LPN", "preferred",
"LS", "expanded",
"LVDN", "preferred",
"LV", "synonym",
"MD", "preferred",
"MH", "preferred",
"MIN", "preferred",
"MP", "attribute",
"MS", "preferred",
"MTH_ACR", "abbreviation",
"MTH_CN", "expanded",
"MTH_CN", "preferred",
"MTH_ET", "entry_term",
"MTH_FN", "preferred",
"MTH_HG", "hierarchical",
"MTH_HT", "hierarchical",
"MTH_HX", "hierarchical",
"MTH_IS", "obsolete",
"MTH_IS", "synonym",
"MTH_LLT", "entry_term",
"MTH_LN", "expanded",
"MTH_LN", "preferred",
"MTH_LO", "expanded",
"MTH_LO", "obsolete",
"MTH_LO", "synonym",
"MTH_OAF", "obsolete",
"MTH_OAP", "obsolete",
"MTH_OAP", "preferred",
"MTH_OAS", "obsolete",
"MTH_OAS", "synonym",
"MTH_OET", "entry_term",
"MTH_OET", "obsolete",
"MTH_OF", "obsolete",
"MTH_OL", "entry_term",
"MTH_OL", "obsolete",
"MTH_OPN", "obsolete",
"MTH_OPN", "preferred",
"MTH_OP", "obsolete",
"MTH_OP", "preferred",
"MTH_OS", "hierarchical",
"MTH_PTGB", "preferred",
"MTH_PTN", "preferred",
"MTH_PT", "expanded",
"MTH_PT", "preferred",
"MTH_RXN_BD", "preferred",
"MTH_RXN_CDC", "preferred",
"MTH_RXN_CD", "preferred",
"MTH_RXN_DP", "preferred",
"MTH_SI", "preferred",
"MTH_SMQ", "preferred",
"MTH_SYGB", "synonym",
"MTH_SY", "synonym",
"MV", "preferred",
"N1", "synonym",
"NA", "preferred",
"NM", "preferred",
"NPT", "synonym",
"NP", "synonym",
"NS", "abbreviation",
"NS", "synonym",
"NX", "expanded",
"NX", "synonym",
"OAF", "obsolete",
"OAM", "abbreviation",
"OAM", "attribute",
"OAM", "obsolete",
"OAP", "obsolete",
"OAS", "obsolete",
"OA", "abbreviation",
"OA", "obsolete",
"OC", "preferred",
"OET", "entry_term",
"OET", "obsolete",
"OF", "obsolete",
"OLC", "obsolete",
"OLG", "obsolete",
"OLJKN1", "entry_term",
"OLJKN1", "obsolete",
"OLJKN", "entry_term",
"OLJKN", "obsolete",
"OL", "entry_term",
"OL", "obsolete",
"OM", "attribute",
"OM", "obsolete",
"ONP", "obsolete",
"ONP", "synonym",
"OOSN", "obsolete",
"OPN", "obsolete",
"OPN", "preferred",
"OP", "obsolete",
"OP", "preferred",
"OR", "preferred",
"OSJKN1", "hierarchical",
"OSJKN", "hierarchical",
"OSN", "abbreviation",
"OSN", "preferred",
"OS", "hierarchical",
"PCE", "entry_term",
"PCE", "preferred",
"PC", "preferred",
"PEP", "entry_term",
"PEP", "preferred",
"PHENO_ET", "entry_term",
"PHENO", "preferred",
"PIN", "preferred",
"PM", "synonym",
"PN", "preferred",
"POS", "preferred",
"PQ", "attribute",
"PR", "preferred",
"PSC", "preferred",
"PSN", "preferred",
"PS", "abbreviation",
"PTAV", "preferred",
"PTCS", "preferred",
"PTGB", "preferred",
"PTJKN1", "preferred",
"PTJKN", "preferred",
"PTN", "preferred",
"PT", "preferred",
"PXQ", "attribute",
"PXQ", "entry_term",
"PX", "expanded",
"PX", "preferred",
"QAB", "abbreviation",
"QEV", "abbreviation",
"QSV", "abbreviation",
"RAB", "abbreviation",
"RHT", "hierarchical",
"RPT", "preferred",
"RS", "other",
"RSY", "synonym",
"RT", "other",
"RXN_IN", "preferred",
"RXN_PT", "preferred",
"SBDC", "preferred",
"SBDF", "preferred",
"SBDG", "preferred",
"SBD", "preferred",
"SB", "other",
"SCALE", "attribute",
"SCDC", "preferred",
"SCDF", "preferred",
"SCDG", "preferred",
"SCD", "preferred",
"SCN", "preferred",
"SC", "other",
"SD", "preferred",
"SI", "preferred",
"SMQ", "preferred",
"SP", "preferred",
"SSN", "abbreviation",
"SS", "abbreviation",
"SS", "synonym",
"ST", "preferred",
"SU", "preferred",
"SX", "expanded",
"SX", "synonym",
"SYGB", "synonym",
"SYN", "synonym",
"SY", "synonym",
"TA", "preferred",
"TC", "hierarchical",
"TG", "preferred",
"TMSY", "synonym",
"TQ", "attribute",
"TQ", "preferred",
"TX", "hierarchical",
"UAUN", "synonym",
"UCN", "preferred",
"UE", "synonym",
"USN", "preferred",
"USY", "synonym",
"VAB", "abbreviation",
"VPT", "preferred",
"VS", "preferred",
"VSY", "synonym",
"XD", "expanded",
"XD", "preferred",
"XM", "other",
"XQ", "attribute",
"XQ", "synonym"
)
)
}
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