lociWidth_: Setter Method for the 'lociWidth' slot in a...
In patrickCNMartin/ChIPanalyserDev: ChIPanalyser: Predicting Transcription Factor Binding Sites
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Setter Method for the lociWidth slot in a
parameterOptions object
Usage
1
lociWidth(object)<-value
Arguments
object
object is parameterOptions object
value
value is the numeric value to be assigned to the lociWidth slot.
Default set at 1.
Details
When using the processingChIP function, the provided ChIP
scores will be split into bins of a given size. lociWidth determines the Size
of that bin. Default is set at 20 000 bp.
This mean that the ChIP profiles provided will be split into bins of 20 000 bp
over the entire profile provided if no loci of interest is provided.
Value
Returns the value assigned to the lociWidth slot in a
parameterOptions object.
Author(s)
Patrick C. N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1
2
3
4
5
6
7
# Loading data
data(ChIPanalyserData)
#Building data objects
GPP <- parameterOptions(lociWidth=20000)
#Setting new Value for lociWidth
lociWidth(GPP) <- 30000
patrickCNMartin/ChIPanalyserDev documentation built on Nov. 14, 2019, 4:39 p.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
Setter Method for the lociWidth slot in a
parameterOptions object
Usage
1 | lociWidth(object)<-value
|
Arguments
object |
|
value |
|
Details
When using the processingChIP function, the provided ChIP
scores will be split into bins of a given size. lociWidth determines the Size
of that bin. Default is set at 20 000 bp.
This mean that the ChIP profiles provided will be split into bins of 20 000 bp
over the entire profile provided if no loci of interest is provided.
Value
Returns the value assigned to the lociWidth slot in a
parameterOptions object.
Author(s)
Patrick C. N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1 2 3 4 5 6 7 | # Loading data
data(ChIPanalyserData)
#Building data objects
GPP <- parameterOptions(lociWidth=20000)
#Setting new Value for lociWidth
lociWidth(GPP) <- 30000
|
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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