ploidy_-: Setter Method for the 'ploidy' slot in an 'parameterOptions'...

Description Usage Arguments Details Value Author(s) References Examples

Description

Setter Method for the ploidy slot in an parameterOptions object

Usage

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ploidy(object)<- value

Arguments

object

object is a parameterOptions object

value

value is a positive integer that describes the ploidy of the organism of interest.

Details

Default value for ploidy is set a 2. It should be mentioned that ChIPanalyser is based on a model that also considers the ploidy of the organism however this only considers simple polyploidy (or haploidy). T he model does not consider hybrids such as wheat.

Value

Returns a parameterOptions object with an updated value for the ploidy slot.

Author(s)

Patrick C. N. Martin <pm16057@essex.ac.uk>

References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.

Examples

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# Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for maxSignal
ploidy(OPP) <- 2

patrickCNMartin/ChIPanalyserDev documentation built on Nov. 14, 2019, 4:39 p.m.