| add1.cca | Add or Drop Single Terms to a Constrained Ordination Model |
| adipart | Additive Diversity Partitioning and Hierarchical Null Model... |
| adonis | Permutational Multivariate Analysis of Variance Using... |
| anosim | Analysis of Similarities |
| anova.cca | Permutation Test for Constrained Correspondence Analysis,... |
| as.mlm | Refit Constrained Ordination as a Multiple Response Linear... |
| BCI | Barro Colorado Island Tree Counts |
| beals | Beals Smoothing and Degree of Absence |
| betadisper | Multivariate homogeneity of groups dispersions (variances) |
| betadiver | Indices of beta Diversity |
| bgdispersal | Coefficients of Biogeographical Dispersal Direction |
| bioenv | Best Subset of Environmental Variables with Maximum (Rank)... |
| biplot.rda | PCA biplot |
| capscale | [Partial] Constrained Analysis of Principal Coordinates or... |
| cascadeKM | K-means partitioning using a range of values of K |
| cca | [Partial] [Constrained] Correspondence Analysis and... |
| cca.object | Result Object from Constrained Ordination with cca, rda or... |
| CCorA | Canonical Correlation Analysis |
| clamtest | Multinomial Species Classification Method (CLAM) |
| contribdiv | Contribution Diversity Approach |
| decorana | Detrended Correspondence Analysis and Basic Reciprocal... |
| decostand | Standardization Methods for Community Ecology |
| density.adonis | Kernel Density Estimation for Permutation Results in Vegan |
| designdist | Design your own Dissimilarities |
| deviance.cca | Statistics Resembling Deviance and AIC for Constrained... |
| dispindmorisita | Morisita index of intraspecific aggregation |
| distconnected | Connectedness of Dissimilarities |
| diversity | Ecological Diversity Indices and Rarefaction Species Richness |
| dune | Vegetation and Environment in Dutch Dune Meadows. |
| dune.taxon | Taxonomic Classification of Dune Meadow Species |
| eigenvals | Extract Eigenvalues from an Ordination Object |
| envfit | Fits an Environmental Vector or Factor onto an Ordination |
| eventstar | Scale Parameter at the Minimum of the Tsallis Evenness... |
| fisherfit | Fit Fisher's Logseries and Preston's Lognormal Model to... |
| goodness.cca | Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA,... |
| goodness.metaMDS | Goodness of Fit and Shepard Plot for Nonmetric... |
| humpfit | No-interaction Model for Hump-backed Species Richness vs.... |
| indpower | Indicator Power of Species |
| isomap | Isometric Feature Mapping Ordination |
| kendall.global | Kendall coefficient of concordance |
| linestack | Plots One-dimensional Diagrams without Overwriting Labels |
| make.cepnames | Abbreviates a Botanical or Zoological Latin Name into an... |
| mantel | Mantel and Partial Mantel Tests for Dissimilarity Matrices |
| mantel.correlog | Mantel Correlogram |
| MDSrotate | Rotate First MDS Dimension Parallel to an External Variable |
| metaMDS | Nonmetric Multidimensional Scaling with Stable Solution from... |
| mite | Oribatid Mite Data with Explanatory Variables |
| model.matrix.cca | Reconstruct Model Frame and Model Matrices of Constrained... |
| monoMDS | Global and Local Non-metric Multidimensional Scaling and... |
| MOStest | Mitchell-Olds & Shaw Test for the Location of Quadratic... |
| mrpp | Multi Response Permutation Procedure and Mean Dissimilarity... |
| mso | Functions for performing and displaying a spatial... |
| multipart | Multiplicative Diversity Partitioning |
| nestedtemp | Nestedness Indices for Communities of Islands or Patches |
| nobs.adonis | Extract the Number of Observations from a vegan Fit. |
| oecosimu | Null Models for Biological Communities |
| ordiarrows | Add Arrows and Line Segments to Ordination Diagrams |
| ordihull | Display Groups or Factor Levels in Ordination Diagrams |
| ordilabel | Add Text on Non-transparent Label to an Ordination Plot. |
| ordiplot | Alternative plot and identify Functions for Ordination |
| ordiplot3d | Three-Dimensional and Dynamic Ordination Graphics |
| ordipointlabel | Ordination Plots with Points and Optimized Locations for Text |
| ordiresids | Plots of Residuals and Fitted Values for Constrained... |
| ordistep | Choose a Model by Permutation Tests in Constrained Ordination |
| ordisurf | Fit and Plot Smooth Surfaces of Variables on Ordination. |
| orditkplot | Ordination Plot with Movable Labels |
| orditorp | Add Text or Points to Ordination Plots |
| ordixyplot | Trellis (Lattice) Plots for Ordination |
| pcnm | Principal Coordinates of Neighbourhood Matrix |
| permatfull | Matrix Permutation Algorithms for Presence-Absence and Count... |
| permutations | Permutation tests in Vegan |
| permutest.betadisper | Permutation test of multivariate homogeneity of groups... |
| plot.cca | Plot or Extract Results of Constrained Correspondence... |
| prc | Principal Response Curves for Treatments with Repeated... |
| predict.cca | Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA,... |
| procrustes | Procrustes Rotation of Two Configurations and PROTEST |
| pyrifos | Response of Aquatic Invertebrates to Insecticide Treatment |
| radfit | Rank - Abundance or Dominance / Diversity Models |
| rankindex | Compares Dissimilarity Indices for Gradient Detection |
| raupcrick | Raup-Crick Dissimilarity with Unequal Sampling Densities of... |
| read.cep | Reads a CEP (Canoco) data file |
| renyi | Renyi and Hill Diversities and Corresponding Accumulation... |
| RsquareAdj | Adjusted R-square |
| scores | Get Species or Site Scores from an Ordination |
| screeplot.cca | Screeplots for Ordination Results and Broken Stick... |
| simper | Similarity Percentages |
| simulate.rda | Simulate Responses with Gaussian Error or Permuted Residuals... |
| sipoo | Birds in the Archipelago of Sipoo (Sibbo) |
| spantree | Minimum Spanning Tree |
| specaccum | Species Accumulation Curves |
| specpool | Extrapolated Species Richness in a Species Pool |
| SSarrhenius | Self-Starting nls Species-Area Models |
| stepacross | Stepacross as Flexible Shortest Paths or Extended... |
| taxondive | Indices of Taxonomic Diversity and Distinctness |
| tolerance | Species tolerances and sample heterogeneities |
| treedive | Functional Diversity estimated from a Species Dendrogram |
| tsallis | Tsallis Diversity and Corresponding Accumulation Curves |
| varechem | Vegetation and environment in lichen pastures |
| varpart | Partition the Variation of Community Matrix by 2, 3, or 4... |
| vegan-defunct | Defunct Functions in Package 'vegan' |
| vegan-deprecated | Deprecated Functions in vegan package |
| vegandocs | Display Package Documentation |
| vegan-internal | Internal vegan functions |
| vegan-package | Community Ecology Package: Ordination, Diversity and... |
| vegdist | Dissimilarity Indices for Community Ecologists |
| vegemite | Display Compact Ordered Community Tables |
| wascores | Weighted Averages Scores for Species |
| wcmdscale | Weighted Classical (Metric) Multidimensional Scaling |
