Description Usage Arguments Value
View source: R/drugPredTestonTrain.R
version 2
1 2 3 4 5 6 7 8 9 10 | drugPredTestonTrain(
path_to_bcclsmmart,
cell_line_response = "cell_line_response_threshold_0.50_large_and_small_screen.RData",
state = "smmart_trained_machine_learning_model.RData",
kbmtl_train = "kbmtl_semisupervised_classification_variational_train.R",
kbmtl_test = "kbmtl_semisupervised_classification_variational_test.R",
path_to_targetid = "target_id.txt",
path_to_trusight = "Trusight_genes.csv",
threshold = 0.5
)
|
path_to_bcclsmmart |
(string):path to FINAL_norm.txt run through normalizeRUV in SMMARTFunctions.R |
state |
(string): path to "smmart_trained_machine_learning_model.RData" from drugPredTrain |
kbmtl_train |
(string): "kbmtl_semisupervised_classification_variational_train.R" |
kbmtl_test |
(string): "kbmtl_semisupervised_classification_variational_test.R" |
path_to_targetid |
(string): path to target_id.txt |
path_to_trusight |
(string): path to gene list Trusight.csv |
threshold |
(numeric): 0.25, 0.5, 0.75 |
Y_predicted(data.frame): prediction
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