processRUV: processRUV
In patterja/smmartprediction: SMMART Drug Prediction
Description
Usage
Arguments
Value
Description
Filter by UHR reps by default. Filtmat must include UHR replicates
For use in normalize RUV functions
Usage
1
processRUV(filtmat, includeBCCL = TRUE, setk)
Arguments
filtmat
(matrix): filtered matrix of sample=columns, genes=rows
includeBCCL
(logic): TRUE/FALSE
setk
(numeric): number of factors to remove.
if includeBCCL=T use CPM + setk=7
if includeBCCL=F use TPM + setk=1
Value
ruvset
patterja/smmartprediction documentation built on Oct. 10, 2020, 3:35 p.m.
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Description Usage Arguments Value
Description
Filter by UHR reps by default. Filtmat must include UHR replicates For use in normalize RUV functions
Usage
1 | processRUV(filtmat, includeBCCL = TRUE, setk)
|
Arguments
filtmat |
(matrix): filtered matrix of sample=columns, genes=rows |
includeBCCL |
(logic): TRUE/FALSE |
setk |
(numeric): number of factors to remove. if includeBCCL=T use CPM + setk=7 if includeBCCL=F use TPM + setk=1 |
Value
ruvset
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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