xsGroupExtract: Extract peak-table from an xcmsSet object
In pattilabwu/Credential3.1: An bioinformatics tool for biologically-relavent feature extraction features and untargeted metabolomics method optimization.
View source: R/xsGroupExtract.R
xsGroupExtract R Documentation
Extract peak-table from an xcmsSet object
Description
Extract peak-table from an xcmsSet object
Usage
xsGroupExtract(xs, intchoice = "into", sampling = 1)
Arguments
xs
a xcmsSet object
intchoice
the intensity options provided by xcms. Options: "into"(default) -raw peak area, "intb" -baseline corrected peak area, "maxo" - peak height
sampling
the way to sampling intensity in each feature group. If 1, sampling mean intensities of all peaks. If 2, sampling the maximum intensity among all peaks.
Value
a list includes two data.tables. featuretable is the detailed featuretable. credTable is the simplified format credentialing accepts in the next step.
pattilabwu/Credential3.1 documentation built on April 30, 2022, 12:48 p.m.
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View source: R/xsGroupExtract.R
| xsGroupExtract | R Documentation |
Extract peak-table from an xcmsSet object
Description
Extract peak-table from an xcmsSet object
Usage
xsGroupExtract(xs, intchoice = "into", sampling = 1)
Arguments
xs |
a xcmsSet object |
intchoice |
the intensity options provided by xcms. Options: "into"(default) -raw peak area, "intb" -baseline corrected peak area, "maxo" - peak height |
sampling |
the way to sampling intensity in each feature group. If 1, sampling mean intensities of all peaks. If 2, sampling the maximum intensity among all peaks. |
Value
a list includes two data.tables. featuretable is the detailed featuretable. credTable is the simplified format credentialing accepts in the next step.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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