setGenome: Specify the reference genome, currently limited to hg38,...
In paul-shannon/IGV: igvR: integrative genomics viewer
setGenome,igvR-method R Documentation
Specify the reference genome, currently limited to hg38, hg19, mm10, tair10.
Description
Specify the reference genome, currently limited to hg38, hg19, mm10, tair10.
Usage
## S4 method for signature 'igvR'
setGenome(obj, genomeName)
Arguments
obj
An object of class igvR
genomeName
A character string, one of "hg38", "hg19", "mm10", "tair10"
Value
An empty string, an error message if the requested genome is not yet supported
Examples
if(interactive()){
igv <- igvR()
setGenome(igv, "mm10")
}
paul-shannon/IGV documentation built on Nov. 5, 2023, 2:09 p.m.
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| setGenome,igvR-method | R Documentation |
Specify the reference genome, currently limited to hg38, hg19, mm10, tair10.
Description
Specify the reference genome, currently limited to hg38, hg19, mm10, tair10.
Usage
## S4 method for signature 'igvR'
setGenome(obj, genomeName)
Arguments
obj |
An object of class igvR |
genomeName |
A character string, one of "hg38", "hg19", "mm10", "tair10" |
Value
An empty string, an error message if the requested genome is not yet supported
Examples
if(interactive()){
igv <- igvR()
setGenome(igv, "mm10")
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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