data_raw/airway_deseq_res.R
In pawel125/omicsTools: Set of classes, codes and scripts which I use for Omics data analysis
library(airway)
library(DESeq2)
library(tidyverse)
data("airway")
se <- airway
dds <- DESeqDataSet(se, design = ~ cell + dex)
keep <- rowSums(counts(dds)) >= 10
dds <- dds[keep,]
dds <- DESeq(dds)
res <- results(dds)
airway_deseq_res <- res %>%
as.data.frame() %>%
rownames_to_column("gene_id")
usethis::use_data(airway_deseq_res)
pawel125/omicsTools documentation built on Jan. 30, 2024, 6:54 p.m.
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library(airway)
library(DESeq2)
library(tidyverse)
data("airway")
se <- airway
dds <- DESeqDataSet(se, design = ~ cell + dex)
keep <- rowSums(counts(dds)) >= 10
dds <- dds[keep,]
dds <- DESeq(dds)
res <- results(dds)
airway_deseq_res <- res %>%
as.data.frame() %>%
rownames_to_column("gene_id")
usethis::use_data(airway_deseq_res)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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