API for pbastide/phylolimma
Phylogenetic Comparative Methods for limma
| Global functions | |
|---|---|
| .PhyloMArrayLM | Man page |
| PhyloMArrayLM-class | Man page |
| addReplicatesOnTree | Man page Source code |
| check.consensus_tree | Source code |
| checkParamMatrix | Man page Source code |
| classifyTestsF | Man page Source code |
| compute_inv_hessian | Man page Source code |
| ddf_samples | Man page Source code |
| ddf_satterthwaite | Man page Source code |
| ddf_satterthwaite_BM_error | Man page Source code |
| ddf_satterthwaite_BM_error_approx | Man page Source code |
| ddf_species | Man page Source code |
| decideTests | Man page Source code |
| dots | Man page Source code |
| eBayes | Man page Source code |
| format_list | Source code |
| getBoundsSelectionStrength | Man page Source code |
| getMaxLambda | Man page Source code |
| getMinError | Man page Source code |
| getSpeciesNumber | Man page Source code |
| get_C_tree | Man page Source code |
| get_chol_tree | Man page Source code |
| get_consensus_tree | Man page Source code |
| get_consensus_tree_BM | Man page Source code |
| get_consensus_tree_OUfixedRoot | Man page Source code |
| get_consensus_tree_OUrandomRoot | Man page Source code |
| get_consensus_tree_delta | Man page Source code |
| get_consensus_tree_lambda | Man page Source code |
| get_ddf | Man page Source code |
| get_dots_args | Man page Source code |
| get_lambda_error | Man page Source code |
| get_lower_bounds | Man page Source code |
| get_starting_values | Man page Source code |
| get_upper_bounds | Man page Source code |
| hessianMinusLogLik | Man page Source code |
| lengthNormalizeRNASeq | Man page Source code |
| light_phylolm | Source code |
| lmFitLimma | Man page Source code |
| normalize_RPKM | Man page Source code |
| normalize_TPM | Man page Source code |
| normalize_none | Man page Source code |
| parse_species | Man page Source code |
| phylogeneticCorrelations | Man page Source code |
| phylolimma | Man page |
| phylolimma-package | Man page |
| phylolmFit | Man page Source code |
| pos_inv | Man page Source code |
| relabel | Source code |
| rescale_tree | Man page Source code |
| rho_prime | Man page Source code |
| rho_prime_inv | Man page Source code |
| transform_data_tree | Man page Source code |
| transform_design_one_tree | Source code |
| transform_design_tree | Man page Source code |
| transform_tree_model_BM | Man page Source code |
| transform_tree_model_OUfixedRoot | Man page Source code |
| transform_tree_model_OUrandomRoot | Man page Source code |
| transform_tree_model_delta | Man page Source code |
| transform_tree_model_lambda | Man page Source code |
| transform_tree_phylolm | Man page Source code |
| treat | Man page Source code |
| tree_height | Man page Source code |
