normalize_none: Normalize RNASeq count data
In pbastide/phylolimma: Phylogenetic Comparative Methods for limma
View source: R/normalization.R
normalize_none R Documentation
Normalize RNASeq count data
Description
Apply standard CPM, with no length normalization.
Usage
normalize_none(countMatrix, normalisationFactor, dataTransformation)
Arguments
countMatrix
The RNASeq count matrix. Rows and columns should be named.
normalisationFactor
Normalization factors to scale the raw library sizes, as computed e.g. by calcNormFactors.
dataTransformation
one of "log2", "asin(sqrt)" or "sqrt." See details.
Value
A matrix of normalized count, with the same dimensions as countMatrix.
pbastide/phylolimma documentation built on Nov. 17, 2024, 1:34 p.m.
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View source: R/normalization.R
| normalize_none | R Documentation |
Normalize RNASeq count data
Description
Apply standard CPM, with no length normalization.
Usage
normalize_none(countMatrix, normalisationFactor, dataTransformation)
Arguments
countMatrix |
The RNASeq count matrix. Rows and columns should be named. |
normalisationFactor |
Normalization factors to scale the raw library sizes, as computed e.g. by |
dataTransformation |
one of "log2", "asin(sqrt)" or "sqrt." See details. |
Value
A matrix of normalized count, with the same dimensions as countMatrix.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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