parse_species: Add replicates to a tree

In pbastide/phylolimma: Phylogenetic Comparative Methods for limma

Add replicates to a tree

Description

Utility function to add replicates to a tree, as tips with zero length branches.

Usage

parse_species(tree, ids, pattern = "(_|\\.).*$")

Arguments

tree	A phylogenetic tree with n tips.
ids	a vector of sample ids.
pattern	a regular expression to find species from sample names. Default to removing everything after a dot or underscore.

Value

A vector of the same length as 'ids', with the species of each sample.

pbastide/phylolimma documentation built on Nov. 17, 2024, 1:34 p.m.