Files in pboesu/debinfer
Bayesian Inference for Differential Equations
.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
CODE_OF_CONDUCT.md
CONTRIBUTING.md
CRAN-SUBMISSION
DEBinfer.Rproj
DESCRIPTION
NAMESPACE
NEWS.md
R/data_doc.R
R/de_mcmc_rev.R
R/de_solver.R
R/debinfer_utils.R
R/mcmc_plotting.R
R/setup_mcmc.R
README.md
cran-comments.md
data-raw/coldinwarm.csv
data-raw/create_chytrid_data.R
data-raw/create_logistic_data.R
data/chytrid.rda
data/logistic.rda
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/articles/chytrid_dede_example.html
docs/articles/chytrid_dede_example_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/chytrid_dede_example_files/figure-html/custom-sim-fig-1.png
docs/articles/chytrid_dede_example_files/figure-html/data-1.png
docs/articles/chytrid_dede_example_files/figure-html/post-sims-ensemble-1.png
docs/articles/chytrid_dede_example_files/figure-html/post-sims-plot-1.png
docs/articles/chytrid_dede_example_files/figure-html/unnamed-chunk-1-1.png
docs/articles/chytrid_dede_example_files/figure-html/unnamed-chunk-2-1.png
docs/articles/chytrid_dede_example_files/figure-html/unnamed-chunk-2-2.png
docs/articles/chytrid_dede_example_files/figure-html/unnamed-chunk-3-1.png
docs/articles/epsilon-sensitivity.pdf
docs/articles/index.html
docs/articles/logistic_ode_example.html
docs/articles/logistic_ode_example_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/logistic_ode_example_files/figure-html/post-dens-1.png
docs/articles/logistic_ode_example_files/figure-html/post-sims-ensemble-1.png
docs/articles/logistic_ode_example_files/figure-html/post-sims-plot-1.png
docs/articles/logistic_ode_example_files/figure-html/unnamed-chunk-1-1.png
docs/articles/logistic_ode_example_files/figure-html/unnamed-chunk-3-1.png
docs/articles/logistic_ode_example_files/figure-html/unnamed-chunk-4-1.png
docs/articles/logistic_ode_example_files/figure-html/unnamed-chunk-5-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/chytrid.html
docs/reference/de_mcmc.html
docs/reference/debinfer_cov.html
docs/reference/debinfer_par.html
docs/reference/deinits.html
docs/reference/depars.html
docs/reference/index.html
docs/reference/is.debinfer_parlist.html
docs/reference/is.debinfer_result.html
docs/reference/log_post_params.html
docs/reference/log_prior_params.html
docs/reference/logd_prior.html
docs/reference/logistic.html
docs/reference/pairs.debinfer_result.html
docs/reference/plot.debinfer_result.html
docs/reference/plot.post_sim_list.html
docs/reference/post_prior_densplot.html
docs/reference/post_sim.html
docs/reference/prior_draw_rev.html
docs/reference/propose_joint_rev.html
docs/reference/propose_single_rev.html
docs/reference/reshape_post_sim.html
docs/reference/setup_debinfer.html
docs/reference/solve_de.html
docs/reference/summary.debinfer_result.html
docs/reference/update_sample_rev.html
inst/CITATION
man/chytrid.Rd
man/de_mcmc.Rd
man/debinfer_cov.Rd
man/debinfer_par.Rd
man/deinits.Rd
man/depars.Rd
man/is.debinfer_parlist.Rd
man/is.debinfer_result.Rd
man/log_post_params.Rd
man/log_prior_params.Rd
man/logd_prior.Rd
man/logistic.Rd
man/pairs.debinfer_result.Rd
man/plot.debinfer_result.Rd
man/plot.post_sim_list.Rd
man/post_prior_densplot.Rd
man/post_sim.Rd
man/prior_draw_rev.Rd
man/propose_joint_rev.Rd
man/propose_single_rev.Rd
man/reshape_post_sim.Rd
man/setup_debinfer.Rd
man/solve_de.Rd
man/summary.debinfer_result.Rd
man/update_sample_rev.Rd
sandbox/CSZ_benchmark_solvealways.png
sandbox/benchmarking_utils.R
sandbox/benchmarks-always-solve.RDS
sandbox/benchmarks-dont-solve-obs-dde.RDS
sandbox/benchmarks-dont-solve-obs.RDS
sandbox/check_R_version_dependecies.R
sandbox/chytrid_dede_example.R
sandbox/conversion_notes.Rmd
sandbox/dde_mcmc_rev_sandbox.R
sandbox/dde_solver_sandbox.R
sandbox/demo/DEB_daphnia.r
sandbox/demo/deb_post_prior_daph.R
sandbox/demo/run_mcmc_daphnia.R
sandbox/joint-proposals-sandbox.R
sandbox/legacy/de_mcmc_legacy.R
sandbox/legacy/plotting_legacy.R
sandbox/legacy/setup_mcmc_legacy.R
sandbox/legacy/solver_utils_legacy.R
sandbox/mcmc_rev_sandbox.R
sandbox/moment_matching.R
sandbox/ode_solver_sandbox.R
sandbox/parlist_remapping.R
sandbox/prior_evaluation_test.R
sandbox/rhub_template.R
sandbox/sampler_benchmarking.R
sandbox/walb_deb_obs_model.R
tests/testthat.R
tests/testthat/test_debinfer_par.R
tests/testthat/test_inference_logistic.R
tests/testthat/test_joint_inference.R
tests/testthat/test_likelihood_eval.R
tests/testthat/test_samplers.R
vignettes/chytrid_dede_example.Rmd
vignettes/deBInfer_compiled_code.pdf
vignettes/deBInfer_compiled_code.pdf.asis
vignettes/deBInfer_compiled_code.pdf.bak
vignettes/debinfer.bib
vignettes/epsilon-sensitivity.pdf
vignettes/logistic_ode_example.Rmd
vignettes/methods-in-ecology-and-evolution.csl
