This is the accompanying
R package for the DEEPN project.
Once that is done, you can install
remotes (which itself can be installed via
deepn can be used to analyze the output from
"deepn.config" is the name of the configuration file that DEEPN outputs containing path names to all the
.csv files needed in the analysis. This will create a file,
stat.csv, containing a table of summary statistics for each gene.
The above analysis may take a while to run, depending on the threshold. To run a "quick" version of the analysis, you can use
which applies a very high PPM threshold of 200 prior to analysis, so that it should only take a minute or two to complete.
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