import: Imports data from CSV files

In pbreheny/deepn: Dynamic Enrichment for Evaluation of Protein Networks

Description

Accepts csv filenames and reads them into a structured list for use in downstream analyses.

Usage

import(vn, vs, bn, bs)

Arguments

vn	Vector of filenames for empty (v)ector under (n)onselective conditions
vs	Vector of filenames for empty (v)ector under (s)elective conditions
bn	Vector of filenames for (b)ait under (n)onselective conditions
bs	Vector of filenames for (b)ait under (s)selective conditions

Value

This function is essentially a wrapper for the readDEEPN function, returning a list of objects:

Vector	Empty vector counts
Bait	Bait counts
multiBait	Logical indicator for whether multiple baits are involved
vtr	Total mapped reads (vector)
btr	Total mapped reads (bait)

Author(s)

Patrick Breheny

See Also

readDEEPN, applyFilter, overdisp

Examples

# Should set up demo data
## Not run: 
vn <- c("file1.csv", "file2.csv")
vs <- c("file3.csv", "file4.csv")
bn <- "file5.csv"
bs <- "file6.csv"
Data <- import(vn, vs, bn, bs)
## End(Not run)

pbreheny/deepn documentation built on May 11, 2020, 3:49 a.m.