NEWS.md

In pcastellanoescuder/fobitools: Tools for Manipulating the FOBI Ontology

fobitools 1.11.4

• Fix bugs in vignettes

fobitools 1.1.9

• Minor changes in package vignette titles.
• Minor changes in parse_fobi() function.
• Update all data files to FOBI 1.5 version.

fobitools 1.0.0

• Released to Bioconductor 3.13.

fobitools 0.99.56

• New package vignette "Use case ST000291".
• New package vignette "Use case ST000629".
• Remove AppVeyor and Travis CI and move codecov to GitHub Actions.
• Updated vignette "Dietary text annotation".
• Improvements to the annotate_foods() function.

fobitools 0.99.41

• Switch from the sigora CRAN package to the fgsea Bioconductor package to perform enrichment analysis.
• Added new function named msea to perform GSEA using FOBI.

fobitools 0.99.38

• Addressing Vince Carey (package reviewer from Bioconductor) comments and suggestions.

fobitools 0.99.35

• Enabling the option to include a FOBI table instead of downloading it from GitHub.
• Added FOBI table in package data.

fobitools 0.99.29

• Fix Bioconductor Single Package Builder errors and warnings:

• fobitools.Rproj file removed

• Rd line widths set to less than 100 characters
• Examples added in ora.R
• R version dependency updated from 3.6.0 to 4.1.
• Use TRUE/FALSE instead of T/F in ora.R

fobitools 0.99.24

• Added vignettes.
• pkgdown updated.
• Submitted to Bioconductor!

fobitools 0.99.18

• Added a function called fobi_graph to generate FOBI graphs.

fobitools 0.99.12

• Added a NEWS.md file to track changes to the package.

pcastellanoescuder/fobitools documentation built on Feb. 17, 2024, 4:30 p.m.