Files in pdolder/MixFishSim
Mixed Fishery fleet dynamics simulation tool
.Rbuildignore
.Rinstignore
.gitignore
DESCRIPTION
LICENSE
MixFishSim.pdf
NAMESPACE
R/RcppExports.R
R/Recr.R
R/Recr_mat.R
R/baranov_f.R
R/close_areas.R
R/combine_logs.R
R/create_fields.R
R/create_hab.R
R/create_spawn_hab.R
R/define_spawn.R
R/deg2rad.R
R/delay_difference.R
R/distance_CalcR.R
R/find_f.R
R/find_spat_f.R
R/find_spat_f_naive.R
R/find_spat_f_pops.R
R/get_bearing.R
R/go_fish.R
R/go_fish_fleet.R
R/init_closure.R
R/init_fleet.R
R/init_moveCov.R
R/init_pop.R
R/init_sim.R
R/init_sim2.R
R/init_survey.R
R/logistic.R
R/make_step.R
R/norm_dist.R
R/package_init.R
R/plot_catch_comp.R
R/plot_daily_fdyn.R
R/plot_fleet_trip.R
R/plot_habitat.R
R/plot_pop_summary.R
R/plot_realised_stepF.R
R/plot_spatiotemp_hab.R
R/plot_survey.R
R/plot_vessel_move.R
R/rad2deg.R
R/run_sim.R
R/step_length.R
R/sum_fleet_catches.R
R/sum_fleets_catches.R
R/test_step.R
R/use_past_knowledge.R
README.md
man/Recr.Rd
man/Recr_mat.Rd
man/baranov_f.Rd
man/close_areas.Rd
man/combine_logs.Rd
man/create_fields.Rd
man/create_hab.Rd
man/create_spawn_hab.Rd
man/define_spawn.Rd
man/deg2rad.Rd
man/delay_diff.Rd
man/distance_calc.Rd
man/distance_calcR.Rd
man/find_f.Rd
man/find_spat_f.Rd
man/find_spat_f_naive.Rd
man/find_spat_f_pops.Rd
man/get_bearing.Rd
man/go_fish.Rd
man/go_fish_fleet.Rd
man/init_closure.Rd
man/init_fleet.Rd
man/init_moveCov.Rd
man/init_pop.Rd
man/init_sim.Rd
man/init_survey.Rd
man/logistic.Rd
man/make_step.Rd
man/move_population.Rd
man/move_prob.Rd
man/move_prob_Lst.Rd
man/norm_fun.Rd
man/plot_catch_comp.Rd
man/plot_daily_fdyn.Rd
man/plot_fleet_trip.Rd
man/plot_habitat.Rd
man/plot_pop_summary.Rd
man/plot_realised_stepF.Rd
man/plot_spatiotemp_hab.Rd
man/plot_survey.Rd
man/plot_vessel_move.Rd
man/rad2deg.Rd
man/run_sim.Rd
man/step_length.Rd
man/sum_fleet_catches.Rd
man/sum_fleets_catches.Rd
man/test_step.Rd
man/use_past_knowledge.Rd
src/MixFishSim.so
src/Movement.cpp
src/Movement.o
src/RcppExports.cpp
src/RcppExports.o
tests/Closure_fishing_locations.png
tests/CondTest.R
tests/FullTest.R
tests/KnowledgeTest/FisherKnowledgeTest.R
tests/KnowledgeTest/habitat.png
tests/KnowledgeTest/habitat_spwn.png
tests/MemTest.R
tests/Plot_Bio.R
tests/Plot_fishing.R
tests/Profiling.R
tests/build.R
tests/closure_return_test.R
tests/closure_test.R
tests/go_fishOLD.R
tests/go_fishOLDER.R
tests/go_fishTEST.R
tests/habitat.png
tests/habitat_spwn.png
tests/moveCovTest.R
tests/plots/Proportion_in_cell.png
tests/plots/annual_summary.png
tests/plots/catch_comp.png
tests/plots/catch_comp_clusters.png
tests/plots/fDynamics.png
tests/plots/fleet_moves.png
tests/plots/fleets_move.png
tests/plots/habitat.png
tests/plots/pop_dist.png
tests/plots/spatial_survey.png
tests/plots/step_function.png
tests/plots/survey_index.png
tests/plots/vessel_move.png
tests/plots/vessel_move_value.png
tests/plots/vessel_multi_move.png
tests/speedup.R
tests/test_parallel_omp.R
tests/testthat.R
tests/vonMises.R
vignettes/Simple_MixFishSim_Example.Rmd
vignettes/Simple_MixFishSim_Example.log
vignettes/Simple_MixFishSim_Example.pdf
write_up/MixFishSimGif2.gif
write_up/Quick_animation.R
write_up/R
