plot_catch_comp: Plot the spatial catch composition from the commercial...

In pdolder/MixFishSim: Mixed Fishery fleet dynamics simulation tool

Plot the spatial catch composition from the commercial catches as 'square pie charts' using mapplots.

Description

Plotting of spatial catch compositions at different levels of aggregation

Usage

plot_catch_comp(
  gran = c(20, 10, 5),
  logs = logs,
  fleets = 1:2,
  vessels = 1:5,
  trips = 1:20,
  years = 18:20,
  cluster_plot = FALSE,
  cluster_k = 5,
  scale_data = NULL
)

Arguments

gran	is a Numeric Vector of granularities required
logs	is the fleet logs from combine_logs
fleets	is a Numeric Vector of the fleets to include in the catch composition plot
vessels	is a Numeric Vector of the vessels to include in the plot
trips	is a Numeric Vector of the trips to include
years	is a Numeric Vector of the years
cluster_plot	is a logical, determines whether also to run PAM cluserting on the catch compositions and plot the clusters spatially
scale_data	is a logical, whether to normalise the data before the clustering
clusters_k	is the number of clusters to search for in the PAM clustering algorithm

Examples

plot_catch_comp(gran = c(20,10,5,2), logs = logs, fleets = 1:2, vessels =
1:5. trips = 1:20, years = 18:20, cluster_plot = FALSE, cluster_k = 5,
scale_data = TRUE)

pdolder/MixFishSim documentation built on Oct. 17, 2023, 4:25 p.m.