Man pages for pdolder/MixFishSim
Mixed Fishery fleet dynamics simulation tool
| baranov_f | Baranov F |
| close_areas | Close areas |
| combine_logs | Combine logs |
| create_fields | Create species distribution fields |
| create_hab | Create habitat distribution fields |
| create_spawn_hab | create spawning habitat |
| define_spawn | define spawning areas |
| deg2rad | Degrees to radians |
| delay_diff | Delay-difference (weekly) |
| distance_calc | distance calculation |
| distance_calcR | Distance calc, R implementation (C++ seems slow??) |
| find_f | find F (fishing mortality) |
| find_spat_f | find spatial Fs (fishing mortality rates) |
| find_spat_f_naive | find spatial Fs (fishing mortality rates), naive methods of... |
| find_spat_f_pops | find spatial f pops |
| get_bearing | Get bearing function |
| go_fish | Go fish |
| go_fish_fleet | Go fish fleet |
| init_closure | Initialise spatial closure(s) |
| init_fleet | Initialise fleet |
| init_moveCov | Initialise movement covariates |
| init_pop | Initialise populations |
| init_sim | Initialise simulation |
| init_survey | Initialise survey settings |
| logistic | Logistic probability |
| make_step | make step function |
| move_population | population movement function |
| move_prob | movement probability function |
| move_prob_Lst | movement probability function as a list |
| norm_fun | Normal distribution |
| plot_catch_comp | Plot the spatial catch composition from the commercial... |
| plot_daily_fdyn | Plot daily fishing mortality dynamics |
| plot_fleet_trip | Plot an entire fleet for a trip |
| plot_habitat | Plot the habitat distribution fields for all populations |
| plot_pop_summary | Plot population summary |
| plot_realised_stepF | Plot realised step function |
| plot_spatiotemp_hab | Plot spatiotemporal habitat suitability |
| plot_survey | Plot the fisheries independent survey results |
| plot_vessel_move | Plot vessel move |
| rad2deg | Radians to degrees |
| Recr | Recruitment function |
| Recr_mat | Recruitment function applied to matrix |
| run_sim | Run sim |
| step_length | Step length function |
| sum_fleet_catches | Sum fleet catches |
| sum_fleets_catches | Sum fleets catches |
| test_step | test step length function |
| use_past_knowledge | Use past knowledge |
