plot_single_param_scan_data: Plot model single parameter scan time courses

In pdp10/sbpiper: Data Analysis Functions for 'SBpipe' Package

Description

Plot model single parameter scan time courses

Usage

plot_single_param_scan_data(model, inhibition_only, inputdir, outputdir, run,
  percent_levels = TRUE, min_level = 0, max_level = 100,
  levels_number = 10, xaxis_label = "", yaxis_label = "")

Arguments

model	The model name
inhibition_only	true if the scanning only decreases the variable amount (inhibition only)
inputdir	the input directory containing the simulated data
outputdir	the output directory that will contain the simulated plots
run	the simulation number
percent_levels	true if scanning levels are in percent (default TRUE)
min_level	the minimum level (default: 0)
max_level	the maximum level (default: 100)
levels_number	the number of levels (default: 10)
xaxis_label	the label for the x axis (e.g. Time (min))
yaxis_label	the label for the y axis (e.g. Level (a.u.))

Examples

data(insulin_receptor_ps1_l0)
data(insulin_receptor_ps1_l1)
data(insulin_receptor_ps1_l3)
data(insulin_receptor_ps1_l4)
data(insulin_receptor_ps1_l6)
data(insulin_receptor_ps1_l8)
data(insulin_receptor_ps1_l9)
data(insulin_receptor_ps1_l11)
data(insulin_receptor_ps1_l13)
data(insulin_receptor_ps1_l14)
data(insulin_receptor_ps1_l16)
dir.create(file.path("ps1_datasets"))
write.table(insulin_receptor_ps1_l0, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_0.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_ps1_l1, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_1.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_ps1_l3, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_3.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_ps1_l4, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_4.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_ps1_l6, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_6.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_ps1_l8, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_8.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_ps1_l9, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_9.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_ps1_l11, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_11.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_ps1_l13, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_13.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_ps1_l14, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_14.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_ps1_l16, 
            file=file.path("ps1_datasets",
                           "insulin_receptor_scan_IR_beta__rep_1__level_16.csv"), 
            row.names=FALSE)
plot_single_param_scan_data(
       model="insulin_receptor_scan_IR_beta", 
       inhibition_only=FALSE,
       inputdir="ps1_datasets", 
       outputdir="ps1_plots",
       run=1,
       percent_levels=TRUE, 
       min_level=0, 
       max_level=250, 
       levels_number=10, 
       xaxis_label="Time [m]", 
       yaxis_label="Level [a.u.]")

pdp10/sbpiper documentation built on May 17, 2019, 11:17 p.m.