addcols | Add list of columns as NULL columns to supplied dataframe. |
add_dp_label | Modify Data Pack Org Unit list to add datapackr IDs. |
adorn_import_file | Convert a 'PSNU-level' DATIM import file into an... |
analyze_eid_2mo | Check Data Pack for <90% PMTCT_EID from ≤02 months |
analyze_indexpos_ratio | Check Data Pack data for low representation of HTS_INDEX_POS |
analyze_linkage | Check Data Pack data for linkage < 95% or >100% |
analyze_pmtctknownpos | Check Data Pack data for PMTCT Known Pos Ratio > 75%. |
analyze_retention | Check Data Pack data for retention < 98% or >100% |
analyze_tbknownpos | Check Data Pack data for TB Known Pos ratio > 75%. |
analyze_vmmc_indeterminate | Check Data Pack data for VMMC_CIRC Indeterminate Rate > 5% |
appendMessage | Title appendMessage |
appendMessage.MessageQueue | Title appendMessage.MessageQueue |
appendUnallocatedData | Title appendUnallocatedData |
aws.executeapi | Title |
cache_is_fresh | Checks whether a cached file is stale |
calculateFinalDedupeValues | Title calculateFinalDedupeValues |
canReadFile | Test for file read access |
can_spawn | Can Spawn |
changePDAPJobApprovalStatus | Title |
checkAnalytics | Check Data Pack data for analytics concerns |
checkColStructure | checkColStructure(d) |
checkHasPSNUxIM | Check that a Data Pack tool has a PSNUxIM tab |
checkInvalidIndicatorCodes | Check for invalid Indicator Codes |
checkMechanisms | Check Mechanisms |
checkNonEqualTargets | checkNonEqualTargets extracts all rows from the PSNUxIM tab... |
checkNonNumericPSNUxIMValues | Title checkNonNumericPSNUxIMValues |
checkNotPEPFARSupportedPSNUs | Title |
checkPSNUData | Check PSNUxIM tab Data |
checkPSNUxIMDisaggs | Title checkPSNUxIMDisaggs |
compareData_DatapackVsDatim | compareData_DatapackVsDatim |
compareData_OpuDatapackVsDatim | compareData_OpuDatapackVsDatim |
cop21_data_pack_schema | Schema describing the correct structure of the COP21 Data... |
COP21_datapacks_countries | Datapack country groupings |
cop21_map_DataPack_DATIM_DEs_COCs | Map of COP21 indicators from Data Pack indicator codes to... |
cop21OPU_data_pack_schema | Schema describing the correct structure of the COP21 OPU Data... |
cop22_data_pack_schema | Schema describing the correct structure of teh COP22 Data... |
cop22_map_adorn_import_file | Map from Data Pack to DATIM for the adorning import files |
cop22_map_DataPack_DATIM_DEs_COCs | Map of COP22 indicators from Data Pack indicator codes to... |
cop22OPU_data_pack_schema | Schema describing the correct structure of the COP22 OPU Data... |
cop22_valid_PSNUs | List of valid COP22 PSNUs used for generating Data Packs. |
cop23_data_pack_schema | Schema describing the correct structure of the COP23 Data... |
cop23_map_DataPack_DATIM_DEs_COCs | Map of COP23 indicators from Data Pack indicator codes to... |
cop23_psnuxim_schema | Schema describing the correct structure of the COP23 PSNUxIM... |
cop24_datapack_countries | Datapack country groupings for COP24 |
cop24_data_pack_schema | Schema describing the correct structure of the COP24 Data... |
cop24_map_DataPack_DATIM_DEs_COCs | Map of COP24 indicators from Data Pack indicator codes to... |
cop24_psnuxim_schema | Schema describing the correct structure of the COP24 PSNUxIM... |
cop_datapack_countries | Datapack country groupings for COP22 and COP23 |
cop_validation_rules | COP Validation Rules |
countryUIDs_homeCell | Location of Country UIDs on Home tab. |
createAnalytics | createAnalytics(d) |
createDataPack | Create a new Data Pack |
createDATIMExport | createDATIMExport |
createKeychainInfo | Create Keychain Info for use in DataPack object. |
createPAWExport | createPAWExport |
create_play_spectrum_output | Create fake Spectrum output for testing |
createTestDataset | Create a test Targets dataset |
datapack_cogs | Datapack Category option groups |
dataPackName_homeCell | Location of Name of the DataPack on the Home tab |
datapackr | Data Pack on R |
datapackr_params | Standardized package function parameter definitions |
datapackrSupports | Supported Tools & COP Years |
dataset_levels | Structure for DATIM data set levels. |
default_catOptCombo | Returns 'default' categoryOptionCombo uid. |
defaultMemoFont | Default Memo Font |
defaultMemoStyleHeader | Default Memo Header Style |
defaultMemoStylePara | Default Memo Paragraph Style |
deleteExistingPDAPJobs | Title |
dropDuplicatedPSNUxIMColumns | Title dropDuplicatedPSNUxIMColumns |
dropInvalidMechColumns | Title dropInvalidMechColumns |
evaluateIndicators | Evaluate Indicators |
exportDistributedDataToDATIM | exportDistributedDataToDATIM(data) |
exportPackr | Export output. |
extractDuplicateRows | Title extractDuplicateRows |
extractOriginalTargets | Title |
extractRawColumnData | Title extractRawColumnData |
extractSNUxIMCombos | Title extractSNUxIMCombos for a given datapack (d) and a... |
extract_uid | Extract UID. |
fetchPrioritizationTable | Fetch Prioritization Table |
formatSetStrings | Title |
fresh_cache_part | Return the fresh portion of a cache file |
generateApprovalMemo | Generate COP Approval Memo Target Tables (DOCX Format) |
generateComparisonTable | Generate Comparison Table |
generateMemoTemplate | Generate Memo Template File |
generatePSNUxIMComparison | Title generatePSNUxIMComparison |
getCodeList | Pull & combine all MER, SUBNAT, IMPATT code lists for... |
getColumnsToKeep | getColumnsToKeep(d) |
getCOPDataFromDATIM | Grab all raw data in DATIM for a country for the COP data... |
getCOPDatasetUids | getCOPDatasetUids |
getCurrentCOPYear | Returns current COP Year |
getDataPackOrgUnits | Pull list of Org Units approved for use in Data Packs from... |
getExistingFileS3Location | Title |
getExistingPDAPJobs | Title |
getHeaderColumns | getHeaderColumns returns a vector of header columns provided... |
getHTSModality | Get HTS Modalities map |
getMapDataPack_DATIM_DEs_COCs | get_Map_DataPack_DATIM_DEs_COCs |
getMaxCores | Title |
getMechanismView | getMechanismView |
getMemoIndicators | Get COP Memo Indicators |
getOPUDataFromDATIM | Pull data for packing OPU Data Pack |
getOUFromCountryUIDs | Get Operating Unit from Country UIDs |
getPDAPJobsAPIURL | Title |
getPresignedURL | Upload DATIM Export to PDAP Title |
getPSNUInfo | getPSNUInfo |
getSaneName | Get Sane Name for Data Pack Tool |
getValidOrgUnits | Return a data frame of valid organisation units based on the... |
handshakeFile | Test an input file for read access and type. Prompt if... |
headerRow | Tool to assist with formatting the header rows |
initiatePDAPJob | Title |
interactive_message | Uses r message instead of print if session is interactive. |
interactive_print | Prints message if session is interactive. |
interactive_warning | Issue a warning if the session is interactive |
is_uidish | Is UID-ish |
listWorkbookContents | listWorkbookContents |
loadDataPack | Load a DataPack from a supplied filepath. |
loadSheets | Load a DataPack from a supplied filepath. |
map_COCs_to_COs | Map categoryoptioncombos to underlying categoryoptions. |
map_Cs_to_COs | Map categoryoptioncombos to underlying categoryoptions. |
map_DataPack_DATIM_DEs_COCs | Map of indicators from Data Pack indicator codes to DATIM... |
memoStructure | COP Memo Target Table Structure |
mergeDatapack | merge two datapacks into one d object. |
MessageQueue | Title MessageQueue |
op-missing-default | Default value for 'missing_arg' |
packDataPack | Pack a Data Pack |
packDataPackSheet | Pack data into a Data Pack sheet |
packDataPackSheets | Loop through and populate normal Data Pack sheets |
packForDATIM | packForDATIM |
packOPUDataPack | Pack an OPU Data Pack |
packPSNUxIM | packPSNUxIM |
packSNUxIM | packSNUxIM(data) |
packTool | Pack a requested tool |
parameter-checks | Standardized Parameter Defaults |
parse_maybe_number | Parse a value to numeric |
parsePSNUs | Extract PSNUs from submitted file |
paste_dataframe | Paste a Dataframe in a string |
paste_oxford | Compile a list ending with different final collapse |
pick_schema | Pick correct schema |
pick_template_path | Pick correct template filepath |
pickUIDFromType | Title pickUIDFromType is a utility function used to obtain a... |
prepareExistingDataAnalytics | Prepare Existing Data Analytics |
prepareMemoData | Prepare Memo Data |
prepareMemoDataByAgency | Prepare Memo Data By Agency Level |
prepareMemoDataByPartner | Prepare Memo Data By Partner |
prepareMemoDataByPrio | Prepare Memo Data By Prioritization Level |
prepareMemoDataByPSNU | Prepare Memo Data By PSNU |
prepareMemoMetadata | Populate necessary metadata for the memo |
prepare_model_data.PSNUxIM | prepare_model_data.PSNUxIM() |
prepareSheetData | Prepare sheet-specific dataset for writing into a Data Pack... |
printMessages | Title printMessages |
printMessages.MessageQueue | Title printMessage.MessageQueue |
prioritization_dict | Define prioritization values. |
prioritizations | Mapping of DATIM Prioritization numerals to strings. |
readSheet | Read data from a DataPack object |
recalculateDedupeValues | Title recalculateDedupeValues Recalculates dedupe values... |
reexports | Default value for 'NULL' |
renderAgencyTable | Render Agency-Level Memo Target Table |
renderPartnerTable | Render Partner-Level Memo Target Tables |
renderPrioTable | Render Prioritization-Level Memo Target Table |
round_trunc | Round at 0.5 toward integer with highest absolute value |
rowMax | Extracts the desired columns for analysis via regular... |
schema-validations | Standardized Schema Checks |
separateDataSets | separateDataSets(d) |
skip_tabs | List of tabs to skip for given tool. |
strip_wb_NAs | Remove errant NAs in a Data Pack |
styleGuide | Library of Openxlsx style objects to apply to both Data Pack... |
supportedCOPYears | Returns COP Years currently supported by the package for a... |
supportedTools | Supported Tools |
swapColumns | Swap columns between two dataframes |
testDropPositiveDedupe | Title testDropPositiveDedupe |
testImbalancedDistribution | Title testImbalancedDistribution |
testInvalidDedupeValues | testInvalidDedupeValues |
testInvalidPSNUs | Title testInvalidPSNUs |
testMissingDedupeRollupColumns | Title testMissingDedupeRollupColumns |
testMissingRightSideFormulas | Title testMissingRightSideFormulas |
testNegativeTargetValues | Title testNegativeTargetValues |
testRoundDecimalValues | Title testRoundDecimalValues |
testRoundingDiffs | Title testRoundingDiffs |
toolName_homeCell | Location of name of the tool on Home tab. |
uid_pattern | DHIS2 UID pattern |
unPackCountryUIDs | Extract country uids from submitted file |
unPackDataChecks | Perform various data quality checks on in-process data from... |
unPackDataPack | Unpack a submitted Data Pack |
unPackDataPackName | Extract the name of the datapack |
unPackDataPackSheet | Unpack a Data Pack sheet. |
unPackOPUDataPack | Unpack a submitted OPU Data Pack |
unPackSheets | Unpack data from Data Pack sheets. |
unPackSNUxIM | unPackSNUxIM(d) |
unPackTool | Unpack a submitted tool |
unPackToolSet | unPackToolSet |
unpackYear2Sheet | Title unpackYear2Sheet |
update_de_coc_co_map | Generate a map from Data Pack indicators to Data Pack DEs,... |
updatePSNUxIMTargetValues | Update PSNUxIM Target Values |
uploadDATIMExportToPDAP | Upload DATIM Export to PDAP |
validationSummary | validationSummary(d) |
valid_OrgUnits | List of valid PSNUs used for generating Data Packs. |
valid_OrgUnits_2024 | List of valid valid organisation units used for generating... |
valid_PSNUs | List of valid PSNUs used for generating Data Packs. |
writeHomeTab | writeHomeTab(wb, datapack_uid, tool = "Data Pack") |
writePDAPExportCSV | Title |
writePSNUxIM | Write PSNUxIM Tab |
writeSpectrumData | writeSpectrumData |
zerosToDashes | Zeroes to Dashes |
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