getSample: Extract samples

In pepkit/pepr: Reading Portable Encapsulated Projects

Extract samples

Description

This method extracts the samples

Usage

getSample(.Object, sampleName)

## S4 method for signature 'Project,character'
getSample(.Object, sampleName)

Arguments

.Object	An object of Project class
sampleName	character the name of the sample

Value

data.table one row data table with the sample associated metadata

Methods (by class)

• getSample(.Object = Project, sampleName = character): extracts the sample from the "Project" object

Examples

projectConfig = system.file(
"extdata",
"example_peps-master",
"example_basic",
"project_config.yaml",
package = "pepr"
)
p = Project(projectConfig)
sampleName = "frog_1"
getSample(p, sampleName)

pepkit/pepr documentation built on Nov. 23, 2023, 5:54 a.m.