Files in pepkit/pepr
Reading Portable Encapsulated Projects

.DS_Store
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/constants.R R/loadConfig.R R/models.R R/pepr.R R/utils.R README.md
_pkgdown.yaml
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/example_peps-master/.gitignore
inst/extdata/example_peps-master/README.md
inst/extdata/example_peps-master/data/frog1_data.txt
inst/extdata/example_peps-master/data/frog1a_data.txt
inst/extdata/example_peps-master/data/frog1a_data2.txt
inst/extdata/example_peps-master/data/frog1b_data.txt
inst/extdata/example_peps-master/data/frog1b_data2.txt
inst/extdata/example_peps-master/data/frog1c_data.txt
inst/extdata/example_peps-master/data/frog1c_data2.txt
inst/extdata/example_peps-master/data/frog2_data.txt
inst/extdata/example_peps-master/data/frog2a_data.txt
inst/extdata/example_peps-master/data/frog2b_data.txt
inst/extdata/example_peps-master/data/frog3_data.txt
inst/extdata/example_peps-master/data/frog4_data.txt
inst/extdata/example_peps-master/example_BiocProject/data/laminB1Lads.bed
inst/extdata/example_peps-master/example_BiocProject/data/vistaEnhancers.bed
inst/extdata/example_peps-master/example_BiocProject/project_config.yaml
inst/extdata/example_peps-master/example_BiocProject/project_config_resize.yaml
inst/extdata/example_peps-master/example_BiocProject/readBedFiles.R inst/extdata/example_peps-master/example_BiocProject/readBedFiles_resize.R
inst/extdata/example_peps-master/example_BiocProject/sample_table.csv
inst/extdata/example_peps-master/example_BiocProject_exceptions/project_config.yaml
inst/extdata/example_peps-master/example_BiocProject_exceptions/readBedFilesExceptions.R
inst/extdata/example_peps-master/example_BiocProject_exceptions/sample_table.csv
inst/extdata/example_peps-master/example_BiocProject_remote/project_config.yaml
inst/extdata/example_peps-master/example_BiocProject_remote/project_config_resize.yaml
inst/extdata/example_peps-master/example_BiocProject_remote/readRemoteData.R inst/extdata/example_peps-master/example_BiocProject_remote/readRemoteData_resize.R
inst/extdata/example_peps-master/example_BiocProject_remote/sample_table.csv
inst/extdata/example_peps-master/example_basic/project_config.yaml
inst/extdata/example_peps-master/example_basic/sample_table.csv
inst/extdata/example_peps-master/example_constants/project_config.yaml
inst/extdata/example_peps-master/example_constants/sample_table.csv
inst/extdata/example_peps-master/example_constants/sample_table_pre.csv
inst/extdata/example_peps-master/example_derived/project_config.yaml
inst/extdata/example_peps-master/example_derived/sample_table.csv
inst/extdata/example_peps-master/example_derived/sample_table_pre.csv
inst/extdata/example_peps-master/example_derived_implied/project_config.yaml
inst/extdata/example_peps-master/example_derived_implied/sample_table.csv
inst/extdata/example_peps-master/example_derived_implied/sample_table_pre.csv
inst/extdata/example_peps-master/example_implied/project_config.yaml
inst/extdata/example_peps-master/example_implied/sample_table.csv
inst/extdata/example_peps-master/example_implied/sample_table_pre.csv
inst/extdata/example_peps-master/example_subprojects1/project_config.yaml
inst/extdata/example_peps-master/example_subprojects1/sample_table.csv
inst/extdata/example_peps-master/example_subprojects1/sample_table_newLib.csv
inst/extdata/example_peps-master/example_subprojects1/sample_table_newLib2.csv
inst/extdata/example_peps-master/example_subprojects1/sample_table_pre.csv
inst/extdata/example_peps-master/example_subprojects2/project_config.yaml
inst/extdata/example_peps-master/example_subprojects2/sample_table.csv
inst/extdata/example_peps-master/example_subprojects2/sample_table_noFrog.csv
inst/extdata/example_peps-master/example_subprojects2/sample_table_pre.csv
inst/extdata/example_peps-master/example_subtable1/project_config.yaml
inst/extdata/example_peps-master/example_subtable1/sample_table.csv
inst/extdata/example_peps-master/example_subtable1/subsample_table.csv
inst/extdata/example_peps-master/example_subtable2/project_config.yaml
inst/extdata/example_peps-master/example_subtable2/sample_table.csv
inst/extdata/example_peps-master/example_subtable2/subsample_table.csv
inst/extdata/example_peps-master/example_subtable3/project_config.yaml
inst/extdata/example_peps-master/example_subtable3/sample_table.csv
inst/extdata/example_peps-master/example_subtable3/subsample_table.csv
inst/extdata/example_peps-master/example_subtable4/project_config.yaml
inst/extdata/example_peps-master/example_subtable4/sample_table.csv
inst/extdata/example_peps-master/example_subtable4/subsample_table.csv
inst/extdata/example_peps-master/example_subtable5/project_config.yaml
inst/extdata/example_peps-master/example_subtable5/sample_table.csv
inst/extdata/example_peps-master/example_subtable5/subsample_table.csv
man/Config-class.Rd man/Project-class.Rd man/Project.Rd man/activateSubproject.Rd man/checkSection-Config-method.Rd man/config.Rd man/dot-expandPath.Rd man/dot-handleSampleAnnotationDeprecation.Rd man/dot-isAbsolute.Rd man/dot-listifyDF.Rd man/dot-loadConfig.Rd man/dot-makeAbsPath.Rd man/dot-printNestedList.Rd man/dot-sanitizeConfig.Rd man/dot-strformat.Rd man/fetchSamples.Rd man/getSample.Rd man/getSubsample.Rd man/listSubprojects.Rd man/pepr.Rd man/samples.Rd
tests/.DS_Store
tests/testthat.R tests/testthat/test_project_creation.R tests/testthat/test_project_operations.R tests/testthat/test_utils.R
update_examples.sh
vignettes/feature1_constantAttributes.Rmd vignettes/feature2_impliedAttributes.Rmd vignettes/feature3_derivedAttributes.Rmd vignettes/feature4_derivedImpliedAttributes.Rmd vignettes/feature5_sampleSubtable.Rmd vignettes/feature6_subprojects.Rmd vignettes/gettingStarted.Rmd
pepkit/pepr documentation built on June 22, 2019, 10:52 p.m.