inst/extdata/example_peps-master/README.md

example_peps

This repository contains examples of Portable Encapsulated Projects. Explore the examples interactively with python or R:

Python

Your basic python workflow uses the peppy package and starts out like this:

import peppy
proj1 = peppy.Project("example_basic/project_config.yaml")

More detailed Python vignettes are available as part of the documentation for the peppy package.

R

Your basic R workflow uses the pepr package and starts like this:

library('pepr')
p = pepr::Project("example_basic/project_config.yaml")

More detailed R vignettes are available as part of the documentation for the pepr package.

Looper

These projects can also be run through any command-line tool (such as a pipeline) using looper. To see a complete example of a PEP and a looper-compatible pipeline, visit the hello looper repository.



pepkit/pepr documentation built on Jan. 11, 2020, 11:06 a.m.