Files in percyfal/nonmodelr
Utility functions for analysis of non model organism data
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/SWindows-class.R
R/WindowedSummarizedExperiment.R
R/Windows-class.R
R/bcftools.R
R/methods-SWindows.R
R/methods-WindowedSummarizedExperiment.R
R/methods-Windows.R
R/methods-manticore.R
R/overlap.R
R/popGenome.R
R/popoolation.R
R/popoolation2.R
R/stats.R
R/utils.R
README.md
exec/popgenome_stats.R
inst/extdata/medium.call.biallelic.vcf.gz
inst/extdata/medium.call.biallelic.vcf.gz.tbi
inst/extdata/medium.call.stats
inst/extdata/popgenome.rda
inst/extdata/popoolation/dmel.A.D.txt.gz
inst/extdata/popoolation/dmel.A.pi.txt.gz
inst/extdata/popoolation/dmel.A.theta.txt.gz
inst/extdata/popoolation/dmel.B.D.txt.gz
inst/extdata/popoolation/dmel.B.pi.txt.gz
inst/extdata/popoolation/dmel.B.theta.txt.gz
inst/extdata/popoolation2/p1_p2.fet
inst/extdata/popoolation2/p1_p2.fet.params
inst/extdata/popoolation2/p1_p2.params
inst/extdata/popoolation2/p1_p2.sync.params
inst/extdata/popoolation2/p1_p2.sync_pwc
inst/extdata/popoolation2/p1_p2.sync_rc
inst/extdata/popoolation2/p1_p2_p1_p2.cmh
inst/extdata/popoolation2/p1_p2_p1_p2.cmh.params
inst/extdata/popoolation2/p1_p2_p1_p2.cmh.rin
inst/extdata/popoolation2/p1_p2_p1_p2.cmh.rout
inst/extdata/popoolation2/p1_p2_w500.fst
inst/extdata/popoolation2/p1_p2_w500.fst.params
inst/extdata/sites.bed
man/BcftoolsStats-class.Rd
man/GENOMEList-class.Rd
man/GENOMEList.Rd
man/GRanges_OR_missing.Rd
man/SWindows-class.Rd
man/VarianceSlidingAssays.Rd
man/Windows-class.Rd
man/gboxplot.Rd
man/genomewide.stats.Rd
man/gplot.Rd
man/gplot.bcftools.stats.Rd
man/identify_outliers.Rd
man/manticore.Rd
man/plot_region_stats.Rd
man/read.bcftools.stats.Rd
man/readBcftoolsStats.Rd
man/readVarianceSliding.Rd
man/summary.bcftools.stats.Rd
manticore.Rproj
tests/testthat.R
tests/testthat/test_bcftools_stats.R
tests/testthat/test_overlap.R
tests/testthat/test_popgenome.R
tests/testthat/test_popoolation.R
tests/testthat/test_popoolation2.R
tests/testthat/test_windows.R
