dmrff.candidates: dmrff.candidates

In perishky/dmrff: Identifying differentially methylated regions efficiently with power and control

dmrff.candidates

Description

Identify candidate differentially methylated regions from EWAS summary statistics.

Usage

dmrff.candidates(
  estimate,
  p.value,
  chr,
  pos,
  maxgap = 500,
  p.cutoff = 0.05,
  verbose = T
)

Arguments

estimate	Vector of EWAS effect estimates (corresponds to rows of methylation).
p.value	Vector of p-values.
chr	Feature chromosome (corresponds to rows of methylation).
pos	Feature chromosome position.
maxgap	Maximum distance between consecutive features (Default: 500bp).
p.cutoff	Unadjusted p-value cutoff for membership in a candidate DMR (Default: 0.05).
verbose	If TRUE (default), then output status messages.

Value

A data frame listing all candidate regions.

perishky/dmrff documentation built on Jan. 4, 2024, 10:23 p.m.