dmrff.plot: Plot a region

In perishky/dmrff: Identifying differentially methylated regions efficiently with power and control

Plot a region

Description

dmrff.plot

Usage

dmrff.plot(
  region.chr,
  region.start,
  region.end,
  estimate,
  se,
  chr,
  pos,
  expand = 1,
  ci = T,
  verbose = T
)

Arguments

estimate	Vector of EWAS effect estimates (corresponds to rows of methylation).
se	Vector of standard errors of the coefficients.
chr	Feature chromosome (corresponds to rows of methylation).
pos	Feature chromosome position.
expand	Proportion to expand to include sites beyond the beginning and end of the region (default: 1, i.e. plot 3x the length of the region).
ci	Show confidence intervals rather than standard errors (default: TRUE).
verbose	If TRUE (default), then output status messages.
region.chr/start/end	Genomic region to plot.
methylation	Methylation matrix (rows=features, columns=samples).

Details

Calculate statistics for a set of genomic regions.

Value

ggplot object showing the plot.

perishky/dmrff documentation built on Jan. 4, 2024, 10:23 p.m.