subPairs: scatterplots of sample-templates distances
In peterawe/CMScaller: CMScaller: an R package for consensus molecular subtyping of colorectal cancer pre-clinical models
Description
Usage
Arguments
Details
Value
Note
See Also
Examples
Description
Pairwise sample-templates distance plots with samples colored
according to predicted class.
Usage
1
Arguments
res
a data frame, result from ntp function.
classCol
a character vector specifying class colors
Details
Upper-panels show the Pearson correlations
between sample-templates distances. Diagonal panels show class and histogram
of distances. The vertical, dashed lines are the distance between two
uncorrelated vectors.
Value
a panel of plots of pair-wise template-distances.
Note
smaller distances indicate more similar samples.
See Also
Examples
1
2
res <- CMScaller(crcTCGAsubset, nPerm=1000, RNAseq=TRUE)
subPairs(res)
peterawe/CMScaller documentation built on June 13, 2020, 4:49 a.m.
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Description Usage Arguments Details Value Note See Also Examples
Description
Pairwise sample-templates distance plots with samples colored according to predicted class.
Usage
1 |
Arguments
res |
a data frame, result from |
classCol |
a character vector specifying class colors |
Details
Upper-panels show the Pearson correlations between sample-templates distances. Diagonal panels show class and histogram of distances. The vertical, dashed lines are the distance between two uncorrelated vectors.
Value
a panel of plots of pair-wise template-distances.
Note
smaller distances indicate more similar samples.
See Also
Examples
1 2 | res <- CMScaller(crcTCGAsubset, nPerm=1000, RNAseq=TRUE)
subPairs(res)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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