boxplotRLE: Boxplot RLE (Relative Log Expression) and correlate to RIN

In peterjuv/FunGenPipe: Tools for building function genomics pipelines

Description

Correlate RLE to median and IQR of RIN. If RIN is not giver, correlate it to straight line, i.e. test if RLEs are equal

Usage

boxplotRLE(
  expLog2,
  filePath = NULL,
  RIN = NULL,
  width = 7,
  height = 7,
  alpha = 0.5,
  ...
)

Arguments

expLog2	Expression matrix (preferably in log2 scale) with genes in rows and samples in columns
filePath	NULL or character; if given, output a PDF; default NULL
RIN	If given, correlate it to median and IQR of RLE; otherwise correlate RLE to a straight line (RLE==1 for all samples)
width	PDF width
height	PDF height
alpha	Transparency of points, passed to geom_point
...	Passed to geom_boxplot

Value

ggplot2 object and PDF if filePath is given

peterjuv/FunGenPipe documentation built on June 18, 2021, 3:38 a.m.