getAnnKeggEntrez: Get collapsed annotations for PGSEA from KEGGREST using...
In peterjuv/FunGenPipe: Tools for building function genomics pipelines
Description
Usage
Arguments
Value
Description
TODO: Consider adding homologous annotations
Usage
1
getAnnKeggEntrez(organism, annPackage, addURL = TRUE)
Arguments
organism
Character KEGG organism abbreviation, e.g., "mmu", "hsa"
annPackage
Character package name with annotations, e.g., "org.Mm.eg.db", "org.Hs.eg.db"
addURL
Logical add a column with factor URL (factorURL), default FALSE
Value
A data frame with annotations: "KeggID", "keggPathName", collapsed gene "SYMBOLs" and "ENTREZIDs"
peterjuv/FunGenPipe documentation built on June 18, 2021, 3:38 a.m.
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Description Usage Arguments Value
Description
TODO: Consider adding homologous annotations
Usage
1 | getAnnKeggEntrez(organism, annPackage, addURL = TRUE)
|
Arguments
organism |
Character KEGG organism abbreviation, e.g., "mmu", "hsa" |
annPackage |
Character package name with annotations, e.g., "org.Mm.eg.db", "org.Hs.eg.db" |
addURL |
Logical add a column with factor URL (factorURL), default FALSE |
Value
A data frame with annotations: "KeggID", "keggPathName", collapsed gene "SYMBOLs" and "ENTREZIDs"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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