confects_plot: Top confident effect sizes plot

Description Usage Arguments Details Value Examples

View source: R/topconfects.R

Description

Create a ggplot2 object showing the confect, effect, and average expression level of top features in a Topconfects object.

Usage

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confects_plot(confects, n = 50, limits = NULL)

Arguments

confects

A "Topconfects" class object, as returned from limma_confects, edger_confects, etc.

n

Number if items to show.

limits

c(lower, upper) limits on x-axis.

Details

For each gene, the estimated effect is shown as a dot. The confidence bound is shown as a line to positive or negative infinity, showing the set of non-rejected effect sizes for the feature.

Value

A ggplot2 object. Working non-interactively, you must print() this for it to be displayed.

Examples

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# Generate some random effect sizes with random accuracies
n <- 100
effect <- rnorm(n, sd=2)
se <- rchisq(n, df=3)^-0.5

# Find top confident effect sizes
confects <- normal_confects(effect, se)

# Plot top confident effect sizes
confects_plot(confects, n=30)

pfh/topconfects documentation built on Sept. 15, 2020, 6:45 p.m.