Description Usage Arguments Details Value Examples

Create a ggplot2 object showing the confect, effect, and average expression level of top features in a Topconfects object.

1 | ```
confects_plot(confects, n = 50, limits = NULL)
``` |

`confects` |
A "Topconfects" class object, as returned from limma_confects, edger_confects, etc. |

`n` |
Number if items to show. |

`limits` |
c(lower, upper) limits on x-axis. |

For each gene, the estimated effect is shown as a dot. The confidence bound is shown as a line to positive or negative infinity, showing the set of non-rejected effect sizes for the feature.

A ggplot2 object. Working non-interactively, you must print() this for it to be displayed.

1 2 3 4 5 6 7 8 9 10 | ```
# Generate some random effect sizes with random accuracies
n <- 100
effect <- rnorm(n, sd=2)
se <- rchisq(n, df=3)^-0.5
# Find top confident effect sizes
confects <- normal_confects(effect, se)
# Plot top confident effect sizes
confects_plot(confects, n=30)
``` |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.