ExtractFilesFromYamlGroup: Loads Yaml file and SNPTables from a YamlGroup

Description Usage Arguments Value

Description

SNPTables are extracted from a YamlGroup according to the headers used in the file names. Modify defaults as required. Objects not present will have their places held by NA.

Usage

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ExtractFilesFromYamlGroup(yaml.group, masterDir, guide.header = "_guide_",
  cy.header = "_cy_", tmr.header = "_tmr_")

Arguments

yaml.group

the list of directories of a yaml file and its associated SNP tables

masterDir

directory where yamlGroup was called

guide.header

tag to search for SNP guide table. The default is "_guide_".

cy.header

tag to search for tmr or SNP 1 table. The default is "_tmr_"

tmr.header

tag to search for cy or SNP 2 table. The default is "_cy_"

Value

A list ordered in the following way: The first object will the the experimental data loaded from the Yaml file The second object will the guide SNP data table The third object will be the tmr SNP data table. The fourth object will be the cy SNP data table.


pginart/SNPFISHAnalysis documentation built on May 25, 2019, 2:54 a.m.