GetAllYamlGroupsinDir: Searches the given directory for all readMe.yaml files
In pginart/SNPFISHAnalysis: Creates basic analysis for Raj Lab SNP FISH workflow
Description
Usage
Arguments
Value
Description
Searches the given directory for all readMe.yaml files within all
subdirectories as well as their associated files their associated
"SNPTable_" files in that directory.
NOTE: This function assumes that your YAML readme is in the same
directory as its paired SNP CSV data. If thatis not the case,
it will not work correctly.
Usage
1
2
GetAllYamlGroupsinDir(dir, snptable.header = "SNPTable_",
yamlfile.header = "readMe.yaml")
Arguments
dir
the directory that you are searching within
snptable.header
the key text to grep when searching for the SNP csv.
Default is "SNPTable_".
yamlfile.header
the key text to grep when searching for the readMe.yaml.
Default is "readMe.yaml".
Value
A list with each element corresponding to a unique readMe.yaml file. For
each of those elements, the first entry will be that yaml file and
subsequent entries will be the associated SNP csv files. Will return NA
if there are no paired SNP csv files found with a given readMe.yaml file.
pginart/SNPFISHAnalysis documentation built on May 25, 2019, 2:54 a.m.
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Description Usage Arguments Value
Description
Searches the given directory for all readMe.yaml files within all subdirectories as well as their associated files their associated "SNPTable_" files in that directory. NOTE: This function assumes that your YAML readme is in the same directory as its paired SNP CSV data. If thatis not the case, it will not work correctly.
Usage
1 2 | GetAllYamlGroupsinDir(dir, snptable.header = "SNPTable_",
yamlfile.header = "readMe.yaml")
|
Arguments
dir |
the directory that you are searching within |
snptable.header |
the key text to grep when searching for the SNP csv. Default is "SNPTable_". |
yamlfile.header |
the key text to grep when searching for the readMe.yaml. Default is "readMe.yaml". |
Value
A list with each element corresponding to a unique readMe.yaml file. For each of those elements, the first entry will be that yaml file and subsequent entries will be the associated SNP csv files. Will return NA if there are no paired SNP csv files found with a given readMe.yaml file.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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