build_data_csv: Create a data object from CSV files.
In phac-nml-phrsd/wem: Wastewater Epidemic Model

build_data_csv

R Documentation

Create a data object from CSV files.

Description

User provides CSV files that records the number of cases, (optionally) hospital admissions and viral concentration in wastewater for a specific location. The various data source do not have to have matching date.

Usage

build_data_csv(path.cases, path.hosp, path.ww, hosp.type, case.date.type)

Arguments

`path.cases`	String. Path to the CSV file with two columns named `date` and `value` that records the number of cases with respect to time.
`path.hosp`	String. Path to the CSV file with two columns named `date` and `value` that records the number of hospitalizations with respect to time.
`path.ww`	String. Path to the CSV file with two columns named `date` and `value` that records the viral concentration in wastewater with respect to time.
`hosp.type`	String. Type of hospitalization provided in `path.hosp`: `NULL`, `'hosp.adm'` for hospital admissions, `'hosp.occ'` for hospital occupancy.
`case.date.type`	String. Type of date which cases are based on: `'report'` for reported date and `'episode'` for episode date (date of symptoms onset).