plot_obs_simulation: Plot Observational and Simulated Data

In phac-nml-phrsd/wem: Wastewater Epidemic Model

Plot Observational and Simulated Data

Description

For each wastewater sampling location, it plots observational data and corresponding simulation for reported cases, hospital admissions, hospital occupancy, and measured RNA concentration in wastewater

Usage

plot_obs_simulation(
  df.init,
  obs.long,
  dates.break,
  hosp.var,
  case.var,
  include.cases = TRUE,
  include.ww = TRUE,
  include.hp = TRUE,
  logscale = FALSE
)

Arguments

df.init	Dataframe. Time-series simulation of all wwmodel's compartments
obs.long	Dataframe. Time-series observational data in a long format created by build_obs()
dates.break	Logical. Default is TRUE. Display break dates when effective reproduction number changes
hosp.var	String. Type of hospitalization (e.g., NULL, 'hosp.adm', 'hos.occ')
case.var	String. Type of date for clinical cases (e.g., 'report' and 'episode')
include.cases	Logical.Default is TRUE. Display simulated and observational reported cases
include.ww	Logical. Default is TRUE. Display simulated and observational measured RNA concentration
include.hp	Logical. Default is TRUE. Display simulated and observational hospitalization
logscale	Logical. Default is FALSE. Logarithmic scale for x-axis

Value

Visualization for simulation and observational data

phac-nml-phrsd/wem documentation built on June 6, 2024, 11:06 p.m.