saveSingleFileMultiEIC: Save to disk a plot of all ROI EIC and detected feature range

In phenomecentre/peakPantheR: Peak Picking and Annotation of High Resolution Experiments

Save to disk a plot of all ROI EIC and detected feature range

Description

Plot and save a .png of all ROI (x is RT, y is intensity), with the matching detected peak rt and peakwidth under it.

Usage

saveSingleFileMultiEIC(
    ROIsDataPoint,
    curveFit,
    foundPeakTable,
    savePath,
    width = 15,
    height = 15,
    verbose = TRUE
)

Arguments

ROIsDataPoint	(list) a list of data.frame of raw data points for each ROI (retention time 'rt', mass 'mz' and intensity 'int' (as column) of each raw data points (as row)).
curveFit	(list) a list of peakPantheR_curveFit or NA for each ROI
foundPeakTable	(data.frame) data.frame as generated by findTargetFeatures, with features as rows and peak properties as columns. The following columns are mandatory: cpdID, cpdName, rt, rtmin, rtmax, mzmin, mzmax.
savePath	(str) Full path to save a .png of all ROI EICs, expect 'filepath/filename.png'.
width	(float) Width in cm for a single ROI plot (if more than one plot in total, 2 columns will be used). dpi set to a 100.
height	(float) height in a cm for a single ROI plot. dpi set to 100
verbose	(bool) if TRUE message progress

Value

None

phenomecentre/peakPantheR documentation built on Feb. 29, 2024, 9:07 p.m.